YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or83a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSTFKEERI KDDSKRRDLF VFVRQTMCIA AMYPFGYYVN GSGVLAVLVR FCDLTYELFN  60
   61 YFVSVHIAGL YICTIYINYG QGDLDFFVNC LIQTIIYLWT IAMKLYFRRF RPGLLNTILS 120
  121 NINDEYETRS AVGFSFVTMA GSYRMSKLWI KTYVYCCYIG TIFWLALPIA YRDRSLPLAC 180
  181 WYPFDYTQPG VYEVVFLLQA MGQIQVAASF ASSSGLHMVL CVLISGQYDV LFCSLKNVLA 240
  241 SSYVLMGANM TELNQLQAEQ SAADVEPGQY AYSVEEETPL QELLKVGSSM DFSSAFRLSF 300
  301 VRCIQHHRYI VAALKKIESF YSPIWFVKIG EVTFLMCLVA FVSTKSTAAN SFMRMVSLGQ 360
  361 YLLLVLYELF IICYFADIVF QNSQRCGEAL WRSPWQRHLK DVRSDYMFFM LNSRRQFQLT 420
  421 AGKISNLNVD RFRGTITTAF SFLTLLQKMD ARE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.77
Transmembrane Helix	21	39	0.79
Non-Cytoplasmic	40	85	0.61
Transmembrane Helix	86	107	0.82
Cytoplasmic	108	148	0.86
Transmembrane Helix	149	171	0.87
Non-Cytoplasmic	172	203	0.82
Transmembrane Helix	204	226	0.71
Cytoplasmic	227	323	0.85
Transmembrane Helix	324	344	0.85
Non-Cytoplasmic	345	357	0.68
Transmembrane Helix	358	380	0.81
Cytoplasmic	381	453	0.78