YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|202028565, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRSLVNITS KYKVLRGMIS YGTLWPCGSL IEQTMIEKKT FRTYDWMKCL RFSLFGFFFM  60
   61 GPTIYVWIRL ASVMWPRTDI KSSLCKAITE QTAYDPMAIS SFLFFMTLME GNSYAEAKRE 120
  121 VNDKFLDAYK VGVIYWPCVQ TVNFAFVPAR NQVVFTSFFS MCWTTFLAYV KFLQLHPPVD 180
  181 VDHHALDIHF LEM

Type	Start	End	Confidence
Cytoplasmic	1	48	0.66
Transmembrane Helix	49	68	0.92
Non-Cytoplasmic	69	96	0.57
Transmembrane Helix	97	111	0.38
Cytoplasmic	112	152	0.51
Transmembrane Helix	153	173	0.61
Non-Cytoplasmic	174	193	0.47