YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG11739-PA, CG11...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPLPRVNID EPKYDQNSYL GRAKHFFLLT NPLNVLASAS KLEEARQIVI KYRAGKDVPE  60
   61 CKTIDDVWRA KYLYDSAFHP ETGEKQIVIG RMAAQMPMNT IITGGMMAFY KSTPAVVFWQ 120
  121 WFNQTFNAIV NYTNRSGTSP ISQQQLVTSY CLATSGALVT ALSLNHAVKN MNPLLGRLVP 180
  181 LVAVGAANCI NIPCMRMQEL RNGVTLFDEH SNEMGISKKA AVVGISTVIL SRIAMAIPGM 240
  241 TLTPVLMNVL EKRGFLAKYP RSNAPIQTLF CGFVLIFATP LGCAFFKQRA DIKVDSLESE 300
  301 VRDSIRKKRP ELETVWFNKG L

Type	Start	End	Confidence
Cytoplasmic	1	99	0.91
Transmembrane Helix	100	119	0.67
Non-Cytoplasmic	120	145	0.73
Transmembrane Helix	146	168	0.71
Cytoplasmic	169	219	0.62
Transmembrane Helix	220	242	0.79
Non-Cytoplasmic	243	263	0.75
Transmembrane Helix	264	286	0.89
Cytoplasmic	287	321	0.82