YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or82a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRLFQLQEY CLRAMGHKDD MDSTDSTALS LKHISSLIFV ISAQYPLISY VAYNRNDMEK  60
   61 VTACLSVVFT NMLTVIKIST FLANRKDFWE MIHRFRKMHE QSASHIPRYR EGLDYVAEAN 120
  121 KLASFLGRAY CVSCGLTGLY FMLGPIVKIG VCRWHGTTCD KELPMPMKFP FNDLESPGYE 180
  181 VCFLYTVLVT VVVVAYASAV DGLFISFAIN LRAHFQTLQR QIENWEFPSS EPDTQIRLKS 240
  241 IVEYHVLLLS LSRKLRSIYT PTVMGQFVIT SLQVGVIIYQ LVTNMDSVMD LLLYASFFGS 300
  301 IMLQLFIYCY GGEIIKAESL QVDTAVRLSN WHLASPKTRT SLSLIILQSQ KEVLIRAGFF 360
  361 VASLANFVGI CRTALSLITL IKSIE

Type	Start	End	Confidence
Cytoplasmic	1	33	0.85
Transmembrane Helix	34	53	0.52
Non-Cytoplasmic	54	60	0.52
Transmembrane Helix	61	81	0.54
Cytoplasmic	82	125	0.91
Transmembrane Helix	126	147	0.83
Non-Cytoplasmic	148	182	0.91
Transmembrane Helix	183	205	0.85
Cytoplasmic	206	257	0.93
Transmembrane Helix	258	282	0.85
Non-Cytoplasmic	283	290	0.86
Transmembrane Helix	291	311	0.93
Cytoplasmic	312	356	0.92
Transmembrane Helix	357	378	0.76
Non-Cytoplasmic	379	385	0.67