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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPoCk-PC
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRARRTISI FIEEQTGLTL TPEMLLSTSE SSTHSASEVA GRLQVDVRTG LKWTEAKYRA  60
   61 KIIGHNELLL VAEDPTWKKY IEQFRNPLIL LLLGSALVSV IMKQFDDAVS ITIAILIVVT 120
  121 VAFIQEYRSE KSLEELKKLV PPECHCLREG RLDTFLAREL VPGDIVHLNV GDRVPADVRL 180
  181 FEAVDLSIDE SSFTGETEPA RKITDVLLNN TNVKDHSNMK NIAFMGTLVR CGNGKGIVVS 240
  241 TGERSEFGEV FKMMQAEEAP KTPLQKSMDI LGAQLSFYSF LIIGVIMLLG WLQGKPLSEM 300
  301 FNISVSLAVA AIPEGLPIVV TVTLALGVMR MAKRNSIVKK LPTVETLGCV NVICSDKTGT 360
  361 LTKNEMTATI IITSDGYMAD VTGAGYNDQG EIHIRHCNNV EMAKTNITNL LEIGAVCNNA 420
  421 YIQNGTLLGQ PTEGALVAVA MKNGMYATAE NYVRIQEYPF SSEQKMMAVK CIHKYNNNKE 480
  481 EIFFAKGALE TLLPQCTKYQ FGTQTVPLTK QNEAEFLAEA YEIGRKGLRV LALAKGRSMQ 540
  541 DLIYCGLVGI TDPPRPLVRE SIEMLMQSGV RVKMVTGDAQ ETALAIANLI GIDTIHHQTL 600
  601 SGQEMDQMNE HQLDKVANNV SVFYRVSPRH KLEIVKSLQR SGNIVGMTGD GVNDGVALKK 660
  661 ADIGIAMGKN GTDVCKEAAD MILVNDDFHT IIAAIEEGKG IFYNIRNFVR FQLSTSIAAL 720
  721 ALIALATLMD IANPLNAMQI LWINIIMDGP PAQSLGVEPV DHDVLKQKPR NVKQPMITKS 780
  781 VVVNVLLSAS IIVLGTLWVF QREMADGTLG KTKRDTTMTF TCFVFFDMFN ALSCRSQTKS 840
  841 VFTIGLTTNR MFLLAVAFSI IGQMLVVYFP PLQMVFQTEA LTPYDIFFLV SLTSSVLVVS 900
  901 EIKKWFERTM ERKMYSTRSE LDFV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle