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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPoCk-PA
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLSTSESST HSASEVAGRL QVDVRTGLKW TEAKYRAKII GHNELLLVAE DPTWKKYIEQ  60
   61 FRNPLILLLL GSALVSVIMK QFDDAVSITI AILIVVTVAF IQEYRSEKSL EELKKLVPPE 120
  121 CHCLREGRLD TFLARELVPG DIVHLNVGDR VPADVRLFEA VDLSIDESSF TGETEPARKI 180
  181 TDVLLNNTNV KDHSNMKNIA FMGTLVRCGN GKGIVVSTGE RSEFGEVFKM MQAEEAPKTP 240
  241 LQKSMDILGA QLSFYSFLII GVIMLLGWLQ GKPLSEMFNI SVSLAVAAIP EGLPIVVTVT 300
  301 LALGVMRMAK RNSIVKKLPT VETLGCVNVI CSDKTGTLTK NEMTATIIIT SDGYMADVTG 360
  361 AGYNDQGEIH IRHCNNVEMA KTNITNLLEI GAVCNNAYIQ NGTLLGQPTE GALVAVAMKN 420
  421 GMYATAENYV RIQEYPFSSE QKMMAVKCIH KYNNNKEEIF FAKGALETLL PQCTKYQFGT 480
  481 QTVPLTKQNE AEFLAEAYEI GRKGLRVLAL AKGRSMQDLI YCGLVGITDP PRPLVRESIE 540
  541 MLMQSGVRVK MVTGDAQETA LAIANLIGID TIHHQTLSGQ EMDQMNEHQL DKVANNVSVF 600
  601 YRVSPRHKLE IVKSLQRSGN IVGMTGDGVN DGVALKKADI GIAMGKNGTD VCKEAADMIL 660
  661 VNDDFHTIIA AIEEGKGIFY NIRNFVRFQL STSIAALALI ALATLMDIAN PLNAMQILWI 720
  721 NIIMDGPPAQ SLGVEPVDHD VLKQKPRNVK QPMITKSVVV NVLLSASIIV LGTLWVFQRE 780
  781 MADGTLGKTK RDTTMTFTCF VFFDMFNALS CRSQTKSVFT IGLTTNRMFL LAVAFSIIGQ 840
  841 MLVVYFPPLQ MVFQTEALTP YDIFFLVSLT SSVLVVSEIK KWFERTMERK MYSTRSELDF 900
  901 V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle