YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG11367-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCNNNNNYK NKTTYGYSNN NDTNCIMQKP VPASTAPAFP QLIQASCSNA VEVDPPDSIV  60
   61 GAAGNSEALF AAQRTPDTSE DSECDPFLAS RRATRSSATT SVLHNRKRNS CWGRAHSFLT 120
  121 RNWYLGCLVP ATILGALVFI GWATRDYARQ LLFWIEMQNA WITFAVYMGL FALVSFPVVV 180
  181 GYFVLLITAG YLFGCLRGWV TVILGANIGI AVAHATIRSC RHRIPVQRLI KNDTGRAILR 240
  241 VISGPKAFRV VLFTRLTPIP FGVQNVIFGI SSINTRDYHV ATLIGLLPAQ TINVYLGSTL 300
  301 RSMHEVLSDN DTKLTGYISF LFEVICGVAL MFWVLQKARK ELSETLLSAD YNNEGKHPDV 360
  361 QV

Type	Start	End	Confidence
Cytoplasmic	1	121	0.56
Transmembrane Helix	122	144	0.92
Non-Cytoplasmic	145	162	0.51
Transmembrane Helix	163	186	0.91
Cytoplasmic	187	194	0.41
Transmembrane Helix	195	217	0.83
Non-Cytoplasmic	218	250	0.47
Transmembrane Helix	251	270	0.45
Cytoplasmic	271	277	0.39
Transmembrane Helix	278	297	0.63
Non-Cytoplasmic	298	313	0.66
Transmembrane Helix	314	335	0.87
Cytoplasmic	336	362	0.68