YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG11437-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGNPNTRLL SRLVIDFLIL LGIYGAALVV LPQQLSTAQR GFHCSDTSLK YPYRQPWLTK  60
   61 VHLTIAVVAL PAAFVLVVEM LRAAVVPSST ELTQRFVFVG VRIPRFISEC YKAIGVYLFG 120
  121 LGLTLAAIRL TKHSTGRLRP YFFDICQPTW GTEGGESCSD VTAQNSTLYL EDFSCTEFAA 180
  181 SQDLLALVRH SFPSGFVSTT CYAMGFLIFY SQARLFAPWL RLVRASLQLA CCSLALVVCW 240
  241 ERISTYQNHL TDVAAGAALG GWMAFFATVF VAHLFVEVRV KRRPMPRNEQ IYGYAGYYTR 300
  301 ATYGY

Type	Start	End	Confidence
Cytoplasmic	1	12	0.84
Transmembrane Helix	13	32	0.92
Non-Cytoplasmic	33	60	0.90
Transmembrane Helix	61	85	0.82
Cytoplasmic	86	109	0.92
Transmembrane Helix	110	131	0.85
Non-Cytoplasmic	132	190	0.92
Transmembrane Helix	191	210	0.91
Cytoplasmic	211	221	0.76
Transmembrane Helix	222	244	0.84
Non-Cytoplasmic	245	253	0.88
Transmembrane Helix	254	276	0.93
Cytoplasmic	277	305	0.97