YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	laza-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTFKRGFFC SDLSIRYPYK DCTITVPMLL LMMLLLPMLF VAVVEIMRIC KRFRTRLYFR  60
   61 NLWRAEATFS FGFIATYLTT ELAKHAVGRL RPHFFHGCQP RLDDGSSCSD LQNAELYVEQ 120
  121 FHCTNNNLST RQIRELHVSF PSAHSSLSFY SMVLLALYVH GVWRGRGGVR VLRHVLQFLL 180
  181 LMAALCVSLS RVADYWHHWS DVLAGALLGV TYAAITAAYV GNLLRRQTSS TGRIPPSLNY 240
  241 SHHLHHQLMA DNNNSTASAK VHFLAAAASA SMTTTTPLDD IQDSDVEDSR DCRDSEDSHD 300
  301 SQDSHAENED DNEEVYKSQM SRPVTPPTDL THVV

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.94
Transmembrane Helix	24	46	0.88
Cytoplasmic	47	61	0.86
Transmembrane Helix	62	83	0.80
Non-Cytoplasmic	84	142	0.93
Transmembrane Helix	143	163	0.88
Cytoplasmic	164	173	0.82
Transmembrane Helix	174	193	0.94
Non-Cytoplasmic	194	201	0.80
Transmembrane Helix	202	223	0.94
Cytoplasmic	224	334	0.97