YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TyrR-PA, TyrR-PB
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSADQILFV NVTTTVAAAA LTAAAAVSTT KSGSGNAARG YTDSDDDAGM GTEAVANISG  60
   61 SLVEGLTTVT AALSTAQADK DSAGECEGAV EELHASILGL QLAVPEWEAL LTALVLSVII 120
  121 VLTIIGNILV ILSVFTYKPL RIVQNFFIVS LAVADLTVAL LVLPFNVAYS ILGRWEFGIH 180
  181 LCKLWLTCDV LCCTSSILNL CAIALDRYWA ITDPINYAQK RTVGRVLLLI SGVWLLSLLI 240
  241 SSPPLIGWND WPDEFTSATP CELTSQRGYV IYSSLGSFFI PLAIMTIVYI EIFVATRRRL 300
  301 RERARANKLN TIALKSTELE PMANSSPVAA SNSGSKSRLL ASWLCCGRDR AQFATPMIQN 360
  361 DQESISSETH QPQDSSKAGP HGNSDPQQQH VVVLVKKSRR AKTKDSIKHG KTRGGRKSQS 420
  421 SSTCEPHGEQ QLLPAGGDGG SCQPGGGHSG GGKSDAEIST ESGSDPKGCI QVCVTQADEQ 480
  481 TSLKLTPPQS STGVAAVSVT PLQKKTSGVN QFIEEKQKIS LSKERRAART LGIIMGVFVI 540
  541 CWLPFFLMYV ILPFCQTCCP TNKFKNFITW LGYINSGLNP VIYTIFNLDY RRAFKRLLGL 600
  601 N

Type	Start	End	Confidence
Cytoplasmic	1	6	0.62
Transmembrane Helix	7	27	0.60
Non-Cytoplasmic	28	109	0.95
Transmembrane Helix	110	135	0.88
Cytoplasmic	136	145	0.78
Transmembrane Helix	146	165	0.94
Non-Cytoplasmic	166	183	0.78
Transmembrane Helix	184	205	0.90
Cytoplasmic	206	222	0.91
Transmembrane Helix	223	246	0.88
Non-Cytoplasmic	247	274	0.91
Transmembrane Helix	275	295	0.92
Cytoplasmic	296	529	0.99
Transmembrane Helix	530	552	0.90
Non-Cytoplasmic	553	566	0.94
Transmembrane Helix	567	588	0.83
Cytoplasmic	589	601	0.88