YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CS-2-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	77	0.99
Transmembrane Helix	78	100	0.92
Non-Cytoplasmic	101	136	0.97
Transmembrane Helix	137	159	0.89
Cytoplasmic	160	174	0.90
Transmembrane Helix	175	197	0.90
Non-Cytoplasmic	198	204	0.74
Transmembrane Helix	205	224	0.96
Cytoplasmic	225	234	0.84
Transmembrane Helix	235	254	0.96
Non-Cytoplasmic	255	262	0.74
Transmembrane Helix	263	281	0.86
Cytoplasmic	282	302	0.88
Transmembrane Helix	303	325	0.91
Non-Cytoplasmic	326	382	0.98
Transmembrane Helix	383	404	0.90
Cytoplasmic	405	413	0.85
Transmembrane Helix	414	435	0.90
Non-Cytoplasmic	436	471	0.80
Transmembrane Helix	472	490	0.56
Cytoplasmic	491	919	0.64
Transmembrane Helix	920	947	0.81
Non-Cytoplasmic	948	952	0.74
Transmembrane Helix	953	974	0.90
Cytoplasmic	975	980	0.86
Transmembrane Helix	981	1003	0.94
Non-Cytoplasmic	1004	1010	0.80
Transmembrane Helix	1011	1030	0.94
Cytoplasmic	1031	1037	0.75
Transmembrane Helix	1038	1061	0.88
Non-Cytoplasmic	1062	1147	0.96
Transmembrane Helix	1148	1169	0.93
Cytoplasmic	1170	1206	0.95
Transmembrane Helix	1207	1228	0.94
Non-Cytoplasmic	1229	1416	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSGEPNAE CQSVLDCPWD HTDMSGGDYD SGDYFMRSRK QRDKPSLWDS FQDPPSKKTS  60
   61 GSDADWKKLQ FCLKLFKICT YLLVFAVVLA TSVFANLIYL YMAGNTGGTG PRVQVCSKYP 120
  121 VLRHGQVEAV ASELDQIAWV WALIFAFAAP ELLTFLRALR ICMFKREQRP SGLEVGLVTL 180
  181 FELLHVVGLA LLTFTVLPAL DVTRGAILGC CVCFVPALLN LLTGTRVRWR SADSLVLGLS 240
  241 ILALVAQGSV FLVWPSLSDS MEVQLLAIPL LLISFRWWEN FANTHEAIAY IIRTIRCTRS 300
  301 RYHTYLYLAP LKVLVFAGMG FILHGHEFVE YFGRFRDAWR PHLITLVQSN GDPDALLLAQ 360
  361 ANVSITAPPR RTLFTMQSSP NSVFYALAAQ VGAAYLCHIF GKFACKIKIQ KFSYALPLSL 420
  421 AGPATVCLVT FLAQLRASDP CSLHGFMPDY LSLLALGGSV EELGQRCLDY ALWLWPLWWL 480
  481 AQVWTCLHIW QPHNDRNAPT EKLFVCPWYC GLLVDQCSMM NRRIVDWSEE YLAIKSDLTA 540
  541 PRDPVVALAA DINASRDIQE EDKVPQLIVC ATMWHETEDE MMEFLKSIVR LDEDQCARRM 600
  601 ARTHLNGGKA DDEYYELETN IFFDDAFVSD PRQCQNKRNP PINEYVKTLT RTIDKAAFEV 660
  661 YGVNIRIKPP LKIETPYGGR LVWTLPGRTK MVAHLKNKDK IRHKKRWSQV MYMYYLLGYR 720
  721 IMETKELSPR RKAVIAENTF ILALDGDIDF QPRAVRLLID RMKAVDELGA ACGRIHPVGR 780
  781 GPMVWYQRFE YAIGHWLQKA TEHVIGCVLC SPGCFSLFRA SALMENSVMK RYTMISSEAM 840
  841 KMVQYDQGED RWLCTLLLKA GSRVEYCAAS DAYTHAPESF NEFYNQRRRW VPSTIANIFD 900
  901 ILADADTVVK KNNSISTMYV WYQGMLMIGT VLGPGTIFLM MVGALVAVFS IDIWTAFLWN 960
  961 FFPILLFILA CVYLKQKFQL LIAFVISSVY CLVMMAVLIG IIVQMLEDGP LAPASLFFLL1020
 1021 VAVQITIAGF MHPQEFWALL CGVIYYITIP SMYMLLMIFS VFNMNDVSWG TREAPVLKDD1080
 1081 GKDAVDEANN YLPGWLNDPL LIDSELGEVS LMEQRFWKDL IKQYLKPLEL SREQKQAMAD1140
 1141 GLKELRNMIA FAFVMVNAIF VLIVFLLQLK KEFLHLEWPI DPTDFVSFDR DNLMVGIYRQ1200
 1201 YKELDPIGLC FVIFFGLILI IQFLAMFFHR FATLCQLLAT TQVDWFRTGG QFTDEDAATE1260
 1261 LKGSAVSIAR KLQRPKRLFD DDEDGDPHYD EVLMDSLEGE HRESMVRRQT IFRLHETRDK1320
 1321 QHSDYSNLVF NFERRFFGDD ELNLKNLALN RKSVKLLQER RSAAKVNAAA TPEGTPTPKA1380
 1381 GKRPPVVPMA KKVSFTASNR NNMALYDNGG YEHTEF