YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG7458-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.68
Transmembrane Helix	53	75	0.70
Non-Cytoplasmic	76	175	0.49
Transmembrane Helix	176	197	0.41
Cytoplasmic	198	204	0.80
Transmembrane Helix	205	224	0.88
Non-Cytoplasmic	225	232	0.75
Transmembrane Helix	233	253	0.90
Cytoplasmic	254	261	0.80
Transmembrane Helix	262	283	0.91
Non-Cytoplasmic	284	290	0.79
Transmembrane Helix	291	310	0.91
Cytoplasmic	311	372	0.95
Transmembrane Helix	373	395	0.85
Non-Cytoplasmic	396	408	0.80
Transmembrane Helix	409	428	0.92
Cytoplasmic	429	435	0.88
Transmembrane Helix	436	456	0.92
Non-Cytoplasmic	457	462	0.81
Transmembrane Helix	463	483	0.94
Cytoplasmic	484	493	0.80
Transmembrane Helix	494	514	0.83
Non-Cytoplasmic	515	521	0.75
Transmembrane Helix	522	543	0.91
Cytoplasmic	544	572	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSQKEGNGY RRSDSKTTGH ADAEAATQTA GGDEDNSLDA ILVRIGQFGR YQIINYVLLC  60
   61 VPMLFNAFFS ISYVFTASTV VHRCTVPQCD SPSSVYEEDW LGFTIPKKNS AWDDCHRYAA 120
  121 NISDAISGYT DPSGQYCLKE YFTITSETCG RDFKFRDEEK TISTEFGIYC EDEWKLSMVG 180
  181 TINNVGQFVG IPLGGYFADR YGRRTMLAVA GSVSALMGVI RSLSSNYSMF LVFEFLDMAV 240
  241 GSTLFPTAFL LAIELVGPKR RVAAATIITI FYALGEAFLG FLASQVQHWR WLLRVLYAPA 300
  301 VLQILFLWIL PESVRWLLSQ GAEEKASNVL RRAARINQRP LPEEQLNDLL TSNRQKLSQA 360
  361 NESQYPIMRA VVFFSLRIAN CCLCWFTHTL IALGLSLNSV NLGGNKYTNF MLNGFIQIPG 420
  421 LLLPLVIMDR VGRRHSLCAS MLLCAICMGA SAAVPADNYA GSLALFLIGK LAITCSFQIL 480
  481 YFFTSEIFPT NVRNTLLSLC SMVGRIGSML APQTPLLAKY YIYAPQILFA TFALISGFLT 540
  541 LAFPETADKV LPTTIEEARD LNQAKRRSER SP