YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG7442-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.62
Transmembrane Helix	40	62	0.86
Non-Cytoplasmic	63	161	0.62
Transmembrane Helix	162	183	0.55
Cytoplasmic	184	190	0.73
Transmembrane Helix	191	210	0.91
Non-Cytoplasmic	211	220	0.69
Transmembrane Helix	221	242	0.78
Cytoplasmic	243	247	0.85
Transmembrane Helix	248	269	0.89
Non-Cytoplasmic	270	276	0.77
Transmembrane Helix	277	296	0.89
Cytoplasmic	297	361	0.95
Transmembrane Helix	362	382	0.86
Non-Cytoplasmic	383	395	0.76
Transmembrane Helix	396	414	0.95
Cytoplasmic	415	420	0.91
Transmembrane Helix	421	442	0.91
Non-Cytoplasmic	443	448	0.83
Transmembrane Helix	449	470	0.88
Cytoplasmic	471	480	0.77
Transmembrane Helix	481	500	0.75
Non-Cytoplasmic	501	507	0.63
Transmembrane Helix	508	529	0.89
Cytoplasmic	530	568	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASEAPPAD PAVEVAPPAK DSEDVTLDAI LKHLGQFGRF QLIIFLLICL PMMFHAMFSV  60
   61 TYVFTAATVT HRCSVEECDL PGSNYYEPHT NWSIPKNGKD LDSCNRYTNS ELPQWNHSVD 120
  121 ICSADHFTKN KEACAHNEFV FRDDEVTISN DFGIFCDDEW KLSMVGTINN LGQFFGIPIG 180
  181 GFVADRYGRS FSIALGGILG AVLGVIRSFS PSYGWFLVFE FLDNMTSSTL YSTCFVIGIE 240
  241 LVGPKRRVLA CSVITVFYAV GEVLLAMSAK AFHDWRILLR ITYGPSLILL AYFWILPESV 300
  301 RWLLSQGKEE RAKNILRRAA HVNKRELPES VLDKLVLANR DKLQQSSESR FPIREAFKNF 360
  361 KWRIANCSLC WIVHVLVYYG LSLNVVLLDG DKYNNFAYIA LVEIPGFFMP LLIMDRFGRR 420
  421 YSLCGLMLAS GLCCIGTIFT GADQPVLQLV LFLVGKLTIT ASFQVLYFFA SEIYPTNLRN 480
  481 SLLSFCSMMG RFGSMLAPQT PLLAKYYANA PAMLFAGAAI VSGLLTLFFP ETTNVVLPTT 540
  541 VQEADAIGVK KQSKSKDLDL VVTATQAQ