YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220948670, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKKRFVCV NCGHRVKELF KKYSNTMKTT QCDNCHQITD KYIEFEEFII LIDALLLDSC  60
   61 AFRHIIYNGD FKLYWKVSLV VLLLESFALC RQKLPDPPNA SLHVHEKGFY TYTLQNMGDY 120
  121 MFMTLLLLII TATLSIDWMQ KIGFRNFSLI ILKVVLISNL SKFFLLPILV WRNNTTVFGR 180
  181 NLHHLLVMGH HLCSLVLAYQ AVGATRKNLR WWALTLVVIA FAFKETARQF VSLVVEDN

Type	Start	End	Confidence
Cytoplasmic	1	72	0.81
Transmembrane Helix	73	90	0.65
Non-Cytoplasmic	91	119	0.84
Transmembrane Helix	120	139	0.92
Cytoplasmic	140	148	0.83
Transmembrane Helix	149	171	0.89
Non-Cytoplasmic	172	181	0.88
Transmembrane Helix	182	203	0.87
Cytoplasmic	204	210	0.76
Transmembrane Helix	211	227	0.55
Non-Cytoplasmic	228	238	0.51