YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0303099
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	303	0.55
Transmembrane Helix	304	324	0.93
Non-Cytoplasmic	325	341	0.53
Transmembrane Helix	342	363	0.94
Cytoplasmic	364	369	0.51
Transmembrane Helix	370	392	0.86
Non-Cytoplasmic	393	398	0.50
Transmembrane Helix	399	417	0.87
Cytoplasmic	418	420	0.41
Transmembrane Helix	421	442	0.73
Non-Cytoplasmic	443	453	0.54
Transmembrane Helix	454	475	0.80
Cytoplasmic	476	996	0.62
Transmembrane Helix	997	1019	0.88
Non-Cytoplasmic	1020	1024	0.57
Transmembrane Helix	1025	1045	0.92
Cytoplasmic	1046	1069	0.60
Transmembrane Helix	1070	1091	0.90
Non-Cytoplasmic	1092	1222	0.63
Transmembrane Helix	1223	1243	0.64
Cytoplasmic	1244	1245	0.32
Transmembrane Helix	1246	1266	0.81
Non-Cytoplasmic	1267	1280	0.44
Transmembrane Helix	1281	1303	0.88
Cytoplasmic	1304	1694	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDDKLVSDE VHLRQLSATP SSAFSLQHSR GSDTKEEAPP EGGTMGGKSA APREEGEPDE  60
   61 RVVLRRAVDK GAIALAQIDD LKLEGDDDDE AVVNGEEVDG LGLSNPAAQT TDDEQITVNG 120
  121 TGAAATSSVA ADAASSEQDA ASTAMATPDM SKIPRLPGDG AQMEDNGSGD LPPSLRASTT 180
  181 SILSNLRKKQ QGGPLRGGVA KQTPLRVQSV RIVEAKRAYG PKRRTESCSI FGNSNFEHDL 240
  241 ESGNSLASIP GQSQRPLNNE MYSAFKSGNV VKGILCPSLT NSFKQSSLER SYLTYTHRQR 300
  301 QKSLIIVNVV DFVLKIVLAF VWIMRRSELG PIESDDGTSM ATAITWSVCC GIANMAICFL 360
  361 GYWRCFANNY LHWAAVCTWV LFNIQGFVGQ GVGFADREYL VWYILFVIFV PYAMLPLPLK 420
  421 WCVVGGTITA SCHLAVITII KLQHGEATIN PECVLFQIFA NFILYTAINV AGMYTKYLTD 480
  481 RGQRLAFIET HKAMEHKKES EKELQRTQKL LDSILPNIVN NQIRSEMYKG TDPTVETQFN 540
  541 KLYVYPMDNV SILFADIKGF TELASKTSAQ QLVKILNDLF ARFDRIAEDN HCLRVKLLGD 600
  601 CYYCVSQFES DNWKTRPDHA VCSVETGLHM IKAIKDVRLH THVDLNMRIG IHSGSVMCGV 660
  661 LGNKKWHFDV WSNDVIIANH MESGGIPGRV HISEATLKCL NDAYEVEPGN GGCRDNHLKM 720
  721 LNVKTYLIKR TEPLRPKRRF GTRSSAHLAG SVATAAPPCA TPTALPKSIS ASGSGSIGGV 780
  781 TATGNDGASI DGRSLEYAAT IAVPAQQPTQ LLQQQQKKNI SLNSLPNVVE GVAMDSRRIR 840
  841 NGCGVMGGAG GTGGGGTGPC GMSTVSSPTA MMSAPLEVQL RPRNGACSIQ NLAEAIDGKG 900
  901 LIIEDESTTD WIPEIPFKNL NSPEDGLNRA DSILVDTKED HRVSVAVLDE EIDEFIEQNI 960
  961 QINSNKEIRR EYLNPWTLKF KDKSQEQKFC QLREDMFRSN MLCVFVIWIF MVLCQVIIIP1020
 1021 RCTRLIICLS VGTVILTFCC VLVMAEEFPG LPRCLKTNSA KLVHQRQRRT LFICGVIVSM1080
 1081 CMLSAIGLVL CPSSTYIGTA DEHSRFLRMV SPYSNISMTE KEFKLNVYLS ATIHHNITIS1140
 1141 TPASGGPTPL VDITSSGPSD EFVRSTLNAL TLNLTPPLPQ SHRPYTLTTN GHSVSLSNLS1200
 1201 YSDASVMQSS SDVEGQCAHP EYLVFTWVLC LVSLATALKL YYLVKALMAL AMVAFYTTLI1260
 1261 MMKFGSGDSF SLVELSRLGM PLGVQMLILL ISFLVMVCYH ARLVEVTSRL DFIWKEQAER1320
 1321 ELTNMKSNRA LNDTLIKNIL PDHVATYYLS DEHTDELYSK MHNLCGVMFA SIPNFQDFYS1380
 1381 EDIDNGKACI RILNEIICDF DELLEEPRFA SVEKIKTVGA TYMAAAGLNH EHLRLRGETS1440
 1441 EDSVCDLVEF AFAMKQKLEE INGDAFNNFQ LRVGICSGPL VSGVIGARKP VYDIWGNTVN1500
 1501 VASRMDSTGE NWRVQVPENT AELLCSRGYT CVKRGEIAVK GKGMMTTFYV HPKGISESQL1560
 1561 ISPVRMPAGI PLAQTPNLQR QTSHHGSFSA VVFGMLQASK RSTAIAGTPT GTPSPQIRRG1620
 1621 HRGSTFSSVR LSQKSTTVNP VRRNTTRVRG RSYRQKKSSS NNSIVTQASS SYMPSFRRID1680
 1681 QIETTISKSH NDAL