YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Rcd2-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLITICLL LRILQSCAMP IIDPDSIDES LACPPCENDF PICYKVIVEV ERGNGLPGSC  60
   61 CPRYECLDEE PVCDGSKRRF YKNKCTVCDP CEPLAIQCKE ICPMEEPEPI CLSDNNEYHR 120
  121 NGDIWMENNG CTTCMCEGGY VTRNAVQCNH YYRCNNPVEV KGQCCPVCPD ELGVSNSIYD 180
  181 DGNHKYRNTT SAPILGESES SSSGWSSTVP TDTSDSVPDT SGSPNSSSTS SELATPTPNT 240
  241 SELSSSTERT STDSSYEQLG EFATSESPDL RTDSEEQETS SSDSAMETTT NPTTFEATAT 300
  301 STVSSTSMEL PTATDDGITK MDFNPDGRTP KATDEPTVIL VNATNFLSVV TDNPITNQPA 360
  361 VVAPESTSQI KDLNSMEIQQ IRYPYAEVPQ ERIQTDWPLE CVVIMGFVIL IVFISLYAIV 420
  421 KRYSKNKKYH AIPLNPVRKL NETEKAKTEQ KL

Type	Start	End	Confidence
Signal Peptide	1	18	0.90
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	398	0.99
Transmembrane Helix	399	420	0.92
Cytoplasmic	421	452	0.98