YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4825-PA
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	93	0.57
Transmembrane Helix	94	113	0.91
Cytoplasmic	114	122	0.58
Transmembrane Helix	123	143	0.96
Non-Cytoplasmic	144	152	0.54
Transmembrane Helix	153	174	0.92
Cytoplasmic	175	233	0.60
Transmembrane Helix	234	260	0.67
Non-Cytoplasmic	261	269	0.73
Transmembrane Helix	270	290	0.88
Cytoplasmic	291	334	0.96
Transmembrane Helix	335	353	0.85
Non-Cytoplasmic	354	371	0.76
Transmembrane Helix	372	393	0.90
Cytoplasmic	394	406	0.81
Transmembrane Helix	407	422	0.52
Non-Cytoplasmic	423	435	0.44
Transmembrane Helix	436	458	0.91
Cytoplasmic	459	498	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKRTNSRGT PTSSGDALLD TSFSSAGDAE RDHPAYKSGA ASAPATPTKR RDGSDGSVSS  60
   61 AGARRKRKDE IAQTFVIVNE RPVDDISLDF FYKPHTITLL AVSVLAVMYF AFVRNEANVD 120
  121 ENLWAGLLCI VFFFLIVSVI AFPNGPFTRP HPAVWRILFG CSVLYLLTLQ FLMFQNYPTI 180
  181 RSIFYWIDPK LKNFHIDMEK EYGVNCSDIS WDRVKGHLDV FAWGHFLGWA FKAILIRHMG 240
  241 ILWAISVMWE ITEITFAHLL PNFIECWWDA LILDVIICNG LGIWMGLKIC QILEMREYKW 300
  301 ASIKDISTTT GKIKRAMLQF TPESWSAIRW LDPKSTAMRF AAVIQLVIFW QVTELNTFFL 360
  361 KHIFEMPPDH FIVIGRLIFI GLFVAPSVRQ YYVYVTDTRC KRVGTQCWVY GAIMVSEAIL 420
  421 CIKNGKELFE RTQAINIVLW LTVQVIISVA FVYLAVYWQQ RQLKKVSSTP AKTKETIPAS 480
  481 SSSPSKGKLS PQKEKKLK