YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG18281-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.89
Transmembrane Helix	20	39	0.88
Non-Cytoplasmic	40	58	0.79
Transmembrane Helix	59	81	0.81
Cytoplasmic	82	90	0.64
Transmembrane Helix	91	107	0.89
Non-Cytoplasmic	108	113	0.70
Transmembrane Helix	114	136	0.91
Cytoplasmic	137	146	0.89
Transmembrane Helix	147	166	0.93
Non-Cytoplasmic	167	175	0.73
Transmembrane Helix	176	197	0.93
Cytoplasmic	198	301	0.99
Transmembrane Helix	302	319	0.95
Non-Cytoplasmic	320	339	0.82
Transmembrane Helix	340	360	0.94
Cytoplasmic	361	368	0.76
Transmembrane Helix	369	390	0.87
Non-Cytoplasmic	391	396	0.62
Transmembrane Helix	397	417	0.90
Cytoplasmic	418	424	0.86
Transmembrane Helix	425	450	0.85
Non-Cytoplasmic	451	462	0.90
Transmembrane Helix	463	484	0.93
Cytoplasmic	485	542	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQLKFLRPL VKVLVNRSGI GKASVWHAVI VTFMHYFSWG LLTVPFIEKL SGSFGNRVLL  60
   61 VDGLVYGVRG ILGFVTTPVM GAISDFHGRK VVMLLAVATT YAPIPFMMLK SWWFFAILTV 120
  121 SSICGSTYSS SLAYVADTTT VENRSKGYGI VAASFGAGIA FSPSLGNYLM KSYGSASVIL 180
  181 IAAITGLINI MFIIFAVPES LVLKEKNNML DEESDNKMED INPKERKEIL NREEKLNNHV 240
  241 SANKSNHGTS QNLVTNKELG QQFNKEENLQ NDLTEKEKID NGSLNSSDLW EVLRKSRKDK 300
  301 NLLVIYLITF LSIWPFAGVD STAPVYLKTN MGFEYEEVSM MLGLLSVLAI TSNLLLGYII 360
  361 NIVGAKWSIR LGLLLLLLQL FFFGFGTHHW MYWLSSILAA LATIIPAANN AVASIYASPD 420
  421 NRGAVLGIIS GIECLSEGVG PAFFGVLFFI FQDDSKNKVN SPISMPFVIS AIGVFVAIVL 480
  481 TGFIKKETVE KAPLIYKIID DASEDEVEPL AKTTFKYEKN NGYVKLEIDD NYDSDCKEHS 540
  541 FK