YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0304913, NPF...
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLSWLSTI TTTSSSISTS QLPLVSTTNW SLTSPGTTSA ILADVAASDE DRSGGIIHNQ  60
   61 FVQIFFYVLY ATVFVLGVFG NVLVCYVVLR NRAMQTVTNI FITNLALSDI LLCVLAVPFT 120
  121 PLYTFMGRWA FGRSLCHLVS FAQGCSIYIS TLTLTSIAID RYFVIIYPFH PRMKLSTCIG 180
  181 IIVSIWVIAL LATVPYGMYM KMTNELVNGT QTGNETLVEA TLMLNGSFVA QGSGFIEAPD 240
  241 STSATQAYMQ VMTAGSTGPE MPYVRVYCEE NWPSEQYRKV FGAITTTLQF VLPFFIISIC 300
  301 YVWISVKLNQ RARAKPGSKS SRREEADRDR KKRTNRMLIA MVAVFGLSWL PINVVNIFDD 360
  361 FDDKSNEWRF YILFFFVAHS IAMSSTCYNP FLYAWLNENF RKEFKHVLPC FNPSNNNIIN 420
  421 ITRGYNRSDR NTCGPRLHHG KGDGGMGGGS LDADDQDENG ITQETCLPKE KLLIIPREPT 480
  481 YGNGTGAVSP ILSGRGINAA LVHGGDHQMH QLQPSHHQQV ELTRRIRRRT DETDGDYLDS 540
  541 GDEQTVEVRF SETPFVSTDN TTGISILETS TSHCQDSDVM VELGEAIGAG GGAELGRRIN 600
  601

Type	Start	End	Confidence
Cytoplasmic	1	6	0.50
Transmembrane Helix	7	21	0.37
Non-Cytoplasmic	22	65	0.83
Transmembrane Helix	66	89	0.92
Cytoplasmic	90	99	0.88
Transmembrane Helix	100	122	0.89
Non-Cytoplasmic	123	138	0.80
Transmembrane Helix	139	159	0.85
Cytoplasmic	160	174	0.79
Transmembrane Helix	175	197	0.89
Non-Cytoplasmic	198	281	0.98
Transmembrane Helix	282	305	0.88
Cytoplasmic	306	336	0.93
Transmembrane Helix	337	355	0.93
Non-Cytoplasmic	356	371	0.84
Transmembrane Helix	372	395	0.88
Cytoplasmic	396	600	0.97