YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Ir76a-PC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKMRNLKG REVVIGIFDY KPFMLLDYEK PPLYYDRFMN TTDVTIDGTD IQLMLIFCEL  60
   61 YNCTIQVDTS EPYDWGDIYL NASGYGLVGM ILDRRNDYGV GGMYLWYEAY EYMDMTHFLG 120
  121 RSGVTCLVPA PNRLISWTLL LRPFQFVLWM CVMLCLLLES LALGITRRWE HSSVAAGNSW 180
  181 ISSLRFGCIS TLKLFVNQST NYVTSSYALR TVLVASYMID IILTTVYSGG LAAILTLPTL 240
  241 EEAADSRQRL FDHKLIWTGT SQAWITTIDE RSADPVLLGL MEHYRVYDAN LISAFSHTEQ 300
  301 MGFVVERLQF GHLGNTELIE NDALKRLKLM VDDIYFAFTV AFVPRLWPHL NAYNDFILAW 360
  361 HSSGFDKFWE WKIAAEYMNA HRQNRIVASE KTNLDIGPVK LGIDNFIGLI LLWCFGMICS 420
  421 LLTFLGELWR GQG

Type	Start	End	Confidence
Cytoplasmic	1	143	0.55
Transmembrane Helix	144	166	0.88
Non-Cytoplasmic	167	216	0.51
Transmembrane Helix	217	239	0.79
Cytoplasmic	240	333	0.93
Transmembrane Helix	334	350	0.56
Non-Cytoplasmic	351	405	0.62
Transmembrane Helix	406	426	0.93
Cytoplasmic	427	433	0.52