YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Shal-PA
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVAAWLPF ARAAAIGWVP IATHPLPPPP MPKDRRKTDD EKLLINVSGR RFETWRNTLE  60
   61 KYPDTLLGSN EREFFYDEDC KEYFFDRDPD IFRHILNYYR TGKLHYPKHE CLTSYDEELA 120
  121 FFGIMPDVIG DCCYEDYRDR KRENAERLMD DKLSENGDQN LQQLTNMRQK MWRAFENPHT 180
  181 STSALVFYYV TGFFIAVSVM ANVVETVPCG HRPGRAGTLP CGERYKIVFF CLDTACVMIF 240
  241 TAEYLLRLFA APDRCKFVRS VMSIIDVVAI MPYYIGLGIT DNDDVSGAFV TLRVFRVFRI 300
  301 FKFSRHSQGL RILGYTLKSC ASELGFLVFS LAMAIIIFAT VMFYAEKNVN GTNFTSIPAA 360
  361 FWYTIVTMTT LGYGDMVPET IAGKIVGGVC SLSGVLVIAL PVPVIVSNFS RIYHQNQRAD 420
  421 KRKAQRKARL ARIRIAKASS GAAFVSKKKA AEARWAAQES GIELDDNYRD EDIFELQHHH 480
  481 LLRCLEKTTM

Type	Start	End	Confidence
Cytoplasmic	1	179	0.69
Transmembrane Helix	180	204	0.77
Non-Cytoplasmic	205	225	0.73
Transmembrane Helix	226	246	0.77
Cytoplasmic	247	256	0.77
Transmembrane Helix	257	277	0.81
Non-Cytoplasmic	278	284	0.77
Transmembrane Helix	285	303	0.53
Cytoplasmic	304	323	0.59
Transmembrane Helix	324	345	0.92
Non-Cytoplasmic	346	353	0.60
Transmembrane Helix	354	374	0.84
Cytoplasmic	375	384	0.46
Transmembrane Helix	385	406	0.90
Non-Cytoplasmic	407	490	0.61