YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	frc-PA, frc-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.98
Transmembrane Helix	59	80	0.86
Non-Cytoplasmic	81	88	0.72
Transmembrane Helix	89	111	0.86
Cytoplasmic	112	126	0.86
Transmembrane Helix	127	147	0.88
Non-Cytoplasmic	148	156	0.61
Transmembrane Helix	157	175	0.76
Cytoplasmic	176	181	0.66
Transmembrane Helix	182	199	0.84
Non-Cytoplasmic	200	207	0.71
Transmembrane Helix	208	226	0.87
Cytoplasmic	227	238	0.86
Transmembrane Helix	239	259	0.90
Non-Cytoplasmic	260	274	0.90
Transmembrane Helix	275	296	0.92
Cytoplasmic	297	302	0.82
Transmembrane Helix	303	323	0.89
Non-Cytoplasmic	324	329	0.76
Transmembrane Helix	330	351	0.93
Cytoplasmic	352	373	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSRGGNTT LDLQPLLAES DVGNRELEEK MGGSADRSSL LDGSGSKELS HREREDSALF  60
   61 VKKIGSALFY GLSSFMITVV NKTVLTSYHF PSFLFLSLGQ LTASIVVLGM GKRLKLVNFP 120
  121 PLQRNTFAKI FPLPLIFLGN MMFGLGGTKT LSLPMFAALR RFSILMTMLL ELKILGLRPS 180
  181 NAVQVSVYAM IGGALLAASD DLSFNMRGYI YVMITNALTA SNGVYVKKKL DTSEIGKYGL 240
  241 MYYNSLFMFL PALALNYVTG NLDQALNFEQ WNDSVFVVQF LLSCVMGFIL SYSTILCTQF 300
  301 NSALTTTIVG CLKNICVTYL GMFIGGDYVF SWLNCIGINI SVLASLLYTY VTFRRKRAPD 360
  361 KQDHLPSTRG ENV