YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	blot-PA
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	29	0.86
Non-Cytoplasmic	30	45	0.82
Transmembrane Helix	46	69	0.86
Cytoplasmic	70	90	0.86
Transmembrane Helix	91	111	0.94
Non-Cytoplasmic	112	158	0.94
Transmembrane Helix	159	179	0.94
Cytoplasmic	180	187	0.85
Transmembrane Helix	188	208	0.93
Non-Cytoplasmic	209	236	0.90
Transmembrane Helix	237	257	0.89
Cytoplasmic	258	268	0.81
Transmembrane Helix	269	291	0.91
Non-Cytoplasmic	292	332	0.95
Transmembrane Helix	333	352	0.96
Cytoplasmic	353	362	0.83
Transmembrane Helix	363	384	0.94
Non-Cytoplasmic	385	391	0.88
Transmembrane Helix	392	413	0.94
Cytoplasmic	414	432	0.91
Transmembrane Helix	433	453	0.94
Non-Cytoplasmic	454	467	0.91
Transmembrane Helix	468	487	0.96
Cytoplasmic	488	769	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIRNDTKCS VFRGLVLCLC LNLSYANVVR FPRELDRYGS AYLVPYVVLL FLVGLPMVLL  60
   61 EISVGQFLGQ GAAHTWRASP IFKGACMISR FASWLSAIWV SLQAVLALAY IGMFASNDLP 120
  121 FRECAGPVKL RLSGYLLTGT SGQECLQLTF LTPFWRNPLY FGLLAAGLIG LWIVVMLCTH 180
  181 NAKILRRSIF VFGLVGLVLL CTLTGWEVRN SFSRHYFPEL WGFDSNLLAE SNIWFNALMQ 240
  241 VLFSVNCGFG ALPMITGKFL YKGDAVRTSV VYLCFNLLIN AIAVTLFMVQ FDLSSNGFQN 300
  301 MEELKPLTAI YDRVLNGSRE GDSHLLQHLV PSLIYALIIL SAMVSITVAV YTSTRLVPRR 360
  361 PNYVICLIGL VVAVISFAAP KFLIARVLDS RLVGTMVVTA LVFELIAITW IYGAKNIYTD 420
  421 LEFSIGRPIF RVWMWLWVIC PAILTGILVW WCADDDQYDL LAEYLPRWAP ILFVLAVIVI 480
  481 IACVQIFRQV EYNFFGMICE ASKPAKEWGP ADPLARHSWK QWRSVCQDTG RRDFTLRRRG 540
  541 TRDYTHSIKK GQYSSATKYG VQNGGQTQTP MHQQHWKSST PGNSSPNYSG SMFGDSAIEE 600
  601 DISVDKFPGI TQQQYVPFQA SDTKQSRYSQ RIRQTAQPQT QTQMRPPRES VEKHREVVYI 660
  661 RRLSDGGTGT GHATRIEISP SNESITYGNG KSNNNYSSAM SRNPLGRSTG CLAAPAQPPP 720
  721 PSVHVKRSAS SVVNVNSHKL PPPATSGGAA DHICWRKFNV NPEEYSTEL