YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Papst2-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.97
Transmembrane Helix	59	79	0.87
Non-Cytoplasmic	80	91	0.82
Transmembrane Helix	92	110	0.93
Cytoplasmic	111	137	0.85
Transmembrane Helix	138	157	0.76
Non-Cytoplasmic	158	164	0.64
Transmembrane Helix	165	183	0.65
Cytoplasmic	184	188	0.71
Transmembrane Helix	189	209	0.93
Non-Cytoplasmic	210	216	0.74
Transmembrane Helix	217	238	0.88
Cytoplasmic	239	253	0.77
Transmembrane Helix	254	276	0.86
Non-Cytoplasmic	277	289	0.64
Transmembrane Helix	290	311	0.88
Cytoplasmic	312	317	0.62
Transmembrane Helix	318	338	0.61
Non-Cytoplasmic	339	343	0.63
Transmembrane Helix	344	362	0.86
Cytoplasmic	363	396	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYIDTSASSR MTDNKGSVIT INGGESAGNS PPSQRKSSTS ESPPELRILC FDLTYYNRTT  60
   61 QFLLSCAGVF FLYILYGYLQ ELIFTVEGFK PYGWFLTLVQ FGYYIGFGLV ERRLEGYRIS 120
  121 GGSFWNIEPE PRCIPMRTYL ILAALTLGTM GLSNSSLGYL NYPTQVIFKC CKLIPVLVGS 180
  181 ILIQGKRYGL LDFAAATCMC IGLAWFTLAD SQMTPNFNLL GVAMISGALL CDAAIGNVQE 240
  241 KAMREFKAPS SEVVFYSYGL GFVYLFVIML VTGNFFSGFA FCLEHPVETF GYGFLFSLSG 300
  301 YLGIQFVLAL VRSSGAPIAA TVTTARKAVT IAFSFVLFSK PFTLQYLWSG LIVVLGIYLN 360
  361 VYSKRNKLTL ADVRQRIKQF GAKVARSPSR KFLIEV