YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Rh4-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPLCNASEP PLRPEARSSG NGDLQFLGWN VPPDQIQYIP EHWLTQLEPP ASMHYMLGVF  60
   61 YIFLFCASTV GNGMVIWIFS TSKSLRTPSN MFVLNLAVFD LIMCLKAPIF IYNSFHRGFA 120
  121 LGNTWCQIFA SIGSYSGIGA GMTNAAIGYD RYNVITKPMN RNMTFTKAVI MNIIIWLYCT 180
  181 PWVVLPLTQF WDRFVPEGYL TSCSFDYLSD NFDTRLFVGT IFFFSFVCPT LMILYYYSQI 240
  241 VGHVFSHEKA LREQAKKMNV ESLRSNVDKS KETAEIRIAK AAITICFLFF VSWTPYGVMS 300
  301 LIGAFGDKSL LTPGATMIPA CTCKLVACID PFVYAISHPR YRLELQKRCP WLGVNEKSGE 360
  361 ISSAQSTTTQ EQQQTTAA

Type	Start	End	Confidence
Non-Cytoplasmic	1	56	0.95
Transmembrane Helix	57	79	0.92
Cytoplasmic	80	90	0.86
Transmembrane Helix	91	111	0.93
Non-Cytoplasmic	112	127	0.81
Transmembrane Helix	128	148	0.91
Cytoplasmic	149	167	0.84
Transmembrane Helix	168	185	0.96
Non-Cytoplasmic	186	215	0.90
Transmembrane Helix	216	237	0.93
Cytoplasmic	238	280	0.94
Transmembrane Helix	281	304	0.82
Non-Cytoplasmic	305	314	0.80
Transmembrane Helix	315	336	0.77
Cytoplasmic	337	378	0.83