YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4729-PB, CG472...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLEKLKQL RLIHLCIALT FFTSGLCINF IQLLMHVFIK PIDKRLFRKL MYYACYSLYS  60
   61 QLIFVSDWYA GSKMTVYMDK EDFEKHAGKE HVLLIMNHKY EIDWLNGWMI CEKLGVLGNC 120
  121 KAYAKKAIRY VPIIGWGWWL AEFVFLNRNF DQDKTIITEQ LKVVFSYPDP TWLLLNAEGT 180
  181 RFTPAKHEAS VKFAQERGMT VLKHHLIPRT KGFTASLAPI RGLCPVIYDI NLAYRPTDKT 240
  241 PATMLSLLHG KSVEPHLLMR RIPLEQVPED EKEAAAWLQN LFVEKDKIID SFLETGSFFK 300
  301 TSGIKEVPAY VNKRRLCSLV NFVCWAVFSL SCIFYYVITS LLAANWTAFI TALSVLGLFY 360
  361 WLMGQAINKT QISKASNYGS SKSVAK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.78
Transmembrane Helix	12	34	0.90
Non-Cytoplasmic	35	49	0.72
Transmembrane Helix	50	70	0.74
Cytoplasmic	71	317	0.96
Transmembrane Helix	318	338	0.94
Non-Cytoplasmic	339	345	0.69
Transmembrane Helix	346	364	0.95
Cytoplasmic	365	386	0.95