YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4753-PA, CG475...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHLRGLGRL LIAVTFFTCG FFVNIGQLLL ILLVRPFDKK LSRSLAYYLH YSFYCILVCV  60
   61 AEWYAGSKLR VYIDPQDEQK FFGKEHGLLL MNHTYEIDWL TAWMITDKLG NLGGTKAYAK 120
  121 KMLRYVPVLG WVWWMAEFIF LDRNFEKDKV VIKTQLKEVF SYPDPVWLLL NAEGTRFTPA 180
  181 KHELSVKFAE ERGLPLLKHH LIPRTKGFTT SLPTMRGICP AIYDINLAFK KNAEPKPTML 240
  241 SQLNGEPVEP YMYIRRVPLD VVPDDEKEAA AWMQDFFAEK DKIIDSFHET GSFFKNSGVK 300
  301 EVPEKIYKPR LSTLLNFLGW ATFAVLCILH YLVTSLVAGN WFGFITVLSI LGGFYSLMEY 360
  361 AVNASKISKA SAYGAAAAKK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.72
Transmembrane Helix	10	33	0.90
Non-Cytoplasmic	34	46	0.70
Transmembrane Helix	47	66	0.86
Cytoplasmic	67	312	0.95
Transmembrane Helix	313	333	0.94
Non-Cytoplasmic	334	340	0.77
Transmembrane Helix	341	362	0.90
Cytoplasmic	363	380	0.96