YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mnd-PC, mnd-PA, ...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.98
Transmembrane Helix	43	64	0.91
Non-Cytoplasmic	65	77	0.81
Transmembrane Helix	78	100	0.88
Cytoplasmic	101	122	0.76
Transmembrane Helix	123	146	0.80
Non-Cytoplasmic	147	162	0.85
Transmembrane Helix	163	183	0.93
Cytoplasmic	184	192	0.88
Transmembrane Helix	193	213	0.95
Non-Cytoplasmic	214	231	0.95
Transmembrane Helix	232	252	0.92
Cytoplasmic	253	267	0.86
Transmembrane Helix	268	288	0.92
Non-Cytoplasmic	289	315	0.90
Transmembrane Helix	316	336	0.92
Cytoplasmic	337	355	0.79
Transmembrane Helix	356	380	0.89
Non-Cytoplasmic	381	389	0.74
Transmembrane Helix	390	409	0.94
Cytoplasmic	410	419	0.89
Transmembrane Helix	420	440	0.92
Non-Cytoplasmic	441	446	0.76
Transmembrane Helix	447	467	0.92
Cytoplasmic	468	499	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARVQASDSL IPRQVFEVPP AEPNNSTADS GSQGSGVKLK KQIGLLDGVA IIVGVIVGSG  60
   61 IFVSPKGVLK FSGSIGQSLI VWVLSGVLSM VGALCYAELG TMIPKSGGDY AYIGTAFGPL 120
  121 PAFLYLWVAL LILVPTGNAI TALTFAIYLL KPFWPSCDAP IEAVQLLAAA MICVLTLINC 180
  181 YNVKWVTRVT DIFTGTKVVA LLVIVGAGVW WLFDGNTEHW DNPFSGGLQD PGYIALAFYS 240
  241 GLFSYSGWNY LNFVTEELKD PYRNLPKAIC ISMPVVTVIY MITNIAYFSV LSPDEILSSD 300
  301 AVAVTFGDKM LGYMSWIMPF AVACSTFGSL NGAIFASSRL FFVGARNGHL PAAISLINVN 360
  361 CLTPVPSLIF LGVLTLLLLF IEDVYVLINY VSYVEALFTL ISVSGLLWMR YKQPKTERPI 420
  421 KVNLALPIIY LIVCLFLVIF SCTQTPYVVG IGTIIILSGI PVYYLTIHKP VKWLADTSQA 480
  481 INLWCSKFFI CMPNQEKFD