YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fz-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.74
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.73
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	247	0.99
Transmembrane Helix	248	270	0.94
Cytoplasmic	271	280	0.92
Transmembrane Helix	281	302	0.93
Non-Cytoplasmic	303	340	0.94
Transmembrane Helix	341	364	0.87
Cytoplasmic	365	380	0.82
Transmembrane Helix	381	401	0.94
Non-Cytoplasmic	402	424	0.90
Transmembrane Helix	425	449	0.92
Cytoplasmic	450	469	0.92
Transmembrane Helix	470	492	0.93
Non-Cytoplasmic	493	532	0.95
Transmembrane Helix	533	553	0.94
Cytoplasmic	554	581	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRQILFILP TLIQGVQRYD QSPLDASPYY RSGGGLMASS GTELDGLPHH NRCEPITISI  60
   61 CKNIPYNMTI MPNLIGHTKQ EEAGLEVHQF APLVKIGCSD DLQLFLCSLY VPVCTILERP 120
  121 IPPCRSLCES ARVCEKLMKT YNFNWPENLE CSKFPVHGGE DLCVAENTTS SASTAATPTR 180
  181 SVAKVTTRKH QTGVESPHRN IGFVCPVQLK TPLGMGYELK VGGKDLHDCG APCHAMFFPE 240
  241 RERTVLRYWV GSWAAVCVAS CLFTVLTFLI DSSRFRYPER AIVFLAVCYL VVGCAYVAGL 300
  301 GAGDSVSCRE PFPPPVKLGR LQMMSTITQG HRQTTSCTVL FMALYFCCMA AFAWWSCLAF 360
  361 AWFLAAGLKW GHEAIENKSH LFHLVAWAVP ALQTISVLAL AKVEGDILSG VCFVGQLDTH 420
  421 SLGAFLILPL CIYLSIGALF LLAGFISLFR IRTVMKTDGK RTDKLERLML RIGFFSGLFI 480
  481 LPAVGLLGCL FYEYYNFDEW MIQWHRDICK PFSIPCPAAR APGSPEARPI FQIFMVKYLC 540
  541 SMLVGVTSSV WLYSSKTMVS WRNFVERLQG KEPRTRAQAY V