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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: trn-PA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.64
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRNMMIAFV GIWCILASIG VEPAAGLANC PPGCQCDDNT LVVQCGEGQL DVLPIALNPS  60
   61 IQRLVIKSNK IKTIDSSIQF YAELTFLDLS SNHLMTIPQR TFAYQKKLQE VHLNHNKIGQ 120
  121 ISNKTFIGLS AVTVLNLRGN QISELHQGTF TPLLKIEELN LGENRIGYLD PKAFDGLSQL 180
  181 RILYLDDNAL TTVPDPVIFQ AMPSLAELFL GMNTLQSIQA DAFQDLKGLT RLELKGASLR 240
  241 NISHDSFLGL QELRILDLSD NRLDRIPSVG LSKLVRLEQL SLGQNDFEVI SEGAFMGLKQ 300
  301 LKRLEVNGAL RLKRVMTGAF SDNGNLEYLN LSSNKMLLEV QEGALSGLSQ LKHVVLKANA 360
  361 LTSLAEGLFP WKDLQTLDLS ENPLSCDCRV MWLHNLLVAK NASQDDVSEL LCEFPERLRG 420
  421 ESLRHLNPAM MGCTHADPRK QALIGALLVG SAATITALAL VLYRCRHKIR ETIKGGLWGN 480
  481 SALGRKEREY QKTFCDEDYM SRHQHHPCSL GIHSTFPNTY TAPHHPGATH HYGMCPMPVN 540
  541 DLGAIDPQQK FQQLVVPTAT MISEKKLNNN KALVSQGAID DSASFVLHMK SATMGRDVHQ 600
  601 QNPQLNHYTK PQFLSATATV GDSCYSYADV PMVHGAPLGG PNQPQLRLTQ EHFKQRELYD 660
  661 QEMGSEILDH NYIYSNTHYS MPLEQLGRSK TPTPPPMPPA LPLRNGLCAT TGRRSFQQKS 720
  721 ASQKQQQNNN TLRQFTH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle