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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Ncc69-PA, FBpp03...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTISFELG SAADRPPNRF QVNPVNGNSR KSQGADGPGS GSGAGAGAGA GAGEDGPHEV  60
   61 YRRLTNAEGE LLEDDTFDAT QMLNQRQPRQ QRQSIKSSFR DKDKPSRFKD LQTTTRFQVD 120
  121 PQNEESDESN DSQEERELLD NEYDTKYGKS FRHFTREALP RLDNYRNMMS IQAAYRPTLD 180
  181 ELHNATLVGK NTHSLTRNQD PESGILNGVL KFGWIKGVLV RCLLNIWGVM LFLRLSWVVG 240
  241 QAGVIEGFVL ILTTTAVTTI TALSMSAIST NGVIKGGGTY YMISRSLGPE FGGSIGLIFS 300
  301 LANAVACAMY VVGFCESMLA MMTTFGWEII DGGVQDVRII GCITILLLLI IVVVGMEWEA 360
  361 KAQIGLLIIL LVAIGDFVIG SFIGPKSDAE MAKGFLGYNA TLFKNNLFAD YRPEKGGIQH 420
  421 DFFSVFAIFF PAATGILAGA NISGDLKDPQ KSIPKGTILA IVITTGTYLI MVLQCGATVA 480
  481 RDATGNLSDV VNGTFAFLDC QPGECNYGLQ NSFQVIELVS AFGPLIYAGC YAATLSSALA 540
  541 SLVSAPKVFQ ALCKDELYPK IVWFAKGYGK NNEPVRGYVL TFIIACAFIL IGELNLIAPL 600
  601 ISNFFLAAYM LINFSTFHAS LAKPVGWRPT FKYYNMWLSL LGAILCVAVM FLISWATALI 660
  661 TFAAVLALYL IVAYRKPDVN WGSTTQAQTY KNALMSVQQL NNVEEHVKNY RPQILVLSGL 720
  721 PNTRPVLVDL AYMLTKNLSL LVCGHVLKGS SSQKYRTYLQ ERAGNWFRKH RVKGFYALVD 780
  781 GEDFESGTRA LMQATGIGKL KPNIILMGYK TDWQTCDHKE LDQYFNVMHK ALDMYLSVAI 840
  841 LRVPQGLDCS QVLGSQDGWK TVSDVPRTLQ PNESSGDLQA VDSSVRNGLS GSIDSLSRNV 900
  901 SQASSTSDLS FIAGNQSKDV SGMPDPLDAK SANLVSNSLR KSKLKHDDPA SLYKGPGGAE 960
  961 LPKEVLADLT QFTRKRSHAV IDVWWLYDDG GLTLLLPYII STRRTWQSCK LRVYALANKN1020
 1021 SELEFEQRSM ASLLSKFRID YSDLTLIPDI TKKPQETSTQ FFNELIKDFV VTEKDGENGT1080
 1081 SSRATLNEDD ALITDDDLLA VQDKTNRYLR LREYLREQST KSDLVVMTLP MPRKNIVSAP1140
 1141 LYMAWLESLS RDMPPFLFVR GNQTSVLTFY S

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle