YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Rh7-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAIIMTTLP NLTTDAGDSS FWLTGALSLS EMLANSSHSH STGSTTSTAG SSATESSAVN  60
   61 VGKDHDKHVN DSVSTGLSNY SNYPSYIHYR DKYDLSYIAK VNPFWLQFEP PKSSTFLIMA 120
  121 ALYCLISVVG CVGNAFVIFM FANRKSLRTP ANILVMNLAI CDFLMLIKCP IAIYNNIKEG 180
  181 PALGDIACRL YGFVGGLSGT CAIGTLTAIA LDRYNVVVHP LQPLRRCSRL RSYLIILLIW 240
  241 CYSFLFAVMP ALDIGLSVYV PEGFLTTCSF DYLNKEMPAR IFMALFFVAA YCIPLTSIVY 300
  301 SYFYILKVVF TASRIQSNKD KAKTEQKLAF IVAAIIGLWF LAWSPYAIVA MMGVFGLERH 360
  361 ITPLGSMIPA LFCKTAACVD PYLYAATHPR FRVEVRMLFY GRGVLRRVST TRSSYMTRSR 420
  421 SSFTHRLRTS TTGEGGMGDH RMENYLMNNN LMMVPEETEE NEEIVVVAEI NNSISSVMEQ 480
  481 SKF

Type	Start	End	Confidence
Non-Cytoplasmic	1	115	0.90
Transmembrane Helix	116	141	0.90
Cytoplasmic	142	152	0.82
Transmembrane Helix	153	174	0.88
Non-Cytoplasmic	175	189	0.90
Transmembrane Helix	190	211	0.91
Cytoplasmic	212	231	0.90
Transmembrane Helix	232	254	0.90
Non-Cytoplasmic	255	281	0.94
Transmembrane Helix	282	306	0.89
Cytoplasmic	307	327	0.91
Transmembrane Helix	328	349	0.91
Non-Cytoplasmic	350	364	0.78
Transmembrane Helix	365	386	0.68
Cytoplasmic	387	483	0.78