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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Nrx-IV-PA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPPRSNTKA AFSSLQFGLL CLLLLVNNGI KSVQADAFTD YFSDYDCNQP LMERAVLTAT  60
   61 SSLTERGPDK ARLNGNAAWT PVENTYNHFL TLDLGDPRMV RKIATMGRMH TDEFVTEYIV 120
  121 QYSDDGEFWR SYVNPTSEPQ MFKGNSDGNS IHYNVFEVPI IAQWVRINPT RWHDRISMRV 180
  181 ELYGCDYISE NLYFNGTGLV RYDLRREPIT STKESIRFRF KTAFANGVMM YSRGTQGDYY 240
  241 ALQLKDNKMV LNLDLGSRVM TSLSVGSLLD DNVWHDVVIS RNQRDIIFSV DRVIVRGRIQ 300
  301 GEFTRLNLNR ELYLGGVPNV QEGLIVQQNF SGCLENIYFN STNFIRVMKD STELGEGYLF 360
  361 TRVNTIYACP SPPIYPVTFT TRSSFVRLKG YENSQRLNVS FYFRTYEETG VMLHHDFYSG 420
  421 GYLKVFLEFG KVKIDLKVKD KARIILDNYD DQFNDGKWHS FVISIEKNRL ILNIDQRPMT 480
  481 TTKSMQVATG AQYYIAGGKD KNGFVGCMRL ISVDGNYKLP QDWVKGEEVC CGDDVVVDAC 540
  541 QMIDRCNPNP CQHKGLCHQN SREFFCDCGH TGYAGAVCHT SNNPLSCLAL KNVQHVQQRV 600
  601 NLNLDVDGSG PLEPFPVTCE FYSDGRVITT LSHSQEHTTT VDGFQEPGSF EQSIMYDANQ 660
  661 LQIEALLNRS HSCWQRLSYS CRSSRLFNSP SEAGNFRPFS WWISRHNQPM DYWAGALPGS 720
  721 RKCECGILGK CHDPTKWCNC DSNSLEWMED GGDIREKEYL PVRAVKFGDT GTPLDEKMGR 780
  781 YTLGPLRCEG DDLFSNVVTF RIADASINLP PFDMGHSGDI YLEFRTTQEN SVIFHATGPT 840
  841 DYIKLSLNGG NKLQFQYQAG SGPLGVNVGT SYHLNDNNWH TVSVERNRKE ARLVVDGSIK 900
  901 AEVREPPGPV RALHLTSDLV IGATTEYRDG YVGCIRALLL NGKMVDLKEY SKRGLYGIST 960
  961 GCVGRCESNP CLNNGTCIER YDGYSCDCRW SAFKGPICAD EIGVNLRSSS IIRYEFEGSF1020
 1021 RSTIAENIRV GFTTTIPKGF LLGFSSNLTG EYLTIQISNS GHLRCVFDFG FERQEIIFPK1080
 1081 KHFGLGQYHD MHFMRKNGGS TVVLKVDNYE PVEYNFDIKA SADAQFNNIQ YMYIGKNESM1140
 1141 TDGFVGCVSR VQFDDIYPLK LMFQQNPPKN VKSLGTQLTE DFCGVEPVTH PPIEIETRPP1200
 1201 PLVDEEKLRK AYNEVDSVLL ACLLVILFLL LILMFFLIGR YLHRHKGDYL THEDQGADGA1260
 1261 DDPDDAVLHS TTGHQVRKRT EIFI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle