YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG6928-PA, CG6928-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.75
Transmembrane Helix	20	41	0.81
Non-Cytoplasmic	42	55	0.60
Transmembrane Helix	56	79	0.80
Cytoplasmic	80	93	0.55
Transmembrane Helix	94	119	0.80
Non-Cytoplasmic	120	128	0.46
Transmembrane Helix	129	149	0.85
Cytoplasmic	150	293	0.71
Transmembrane Helix	294	318	0.80
Non-Cytoplasmic	319	326	0.74
Transmembrane Helix	327	349	0.82
Cytoplasmic	350	361	0.76
Transmembrane Helix	362	383	0.87
Non-Cytoplasmic	384	389	0.68
Transmembrane Helix	390	409	0.91
Cytoplasmic	410	419	0.85
Transmembrane Helix	420	443	0.83
Non-Cytoplasmic	444	612	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRKWGYRL LPGLKWLHGY TGQDAVADLI AGVTVGLTVL PQGLAYATLA GLEPQYGLYS  60
   61 AFVGGIIYAM LGSCRQVTIG PTALLALMTS RHTGFGLGSG PAYAILLCLI SGVVELGMAV 120
  121 LKLGALVDLI SLPVTVGFTS ATAVIIGTSQ LKGLLGLRGG SGSDFINTMR SVFGNLHKVR 180
  181 TGDFTLGLTS IIVLLLLRKL KDVKLDGRIR NLRTQQLVSG SIWVIGTGRN ALVVLVTSVL 240
  241 AYSTCEQMES CPFILTGKVK SGLPNVSLPK FETTILDRNG TEIRQNFEQM LSELGPSMLI 300
  301 LPIIAVLGNV AISKAFGGAG LSPTRELVAL SMSNICGAFC SSMPVTGSFS RSAVNHASGV 360
  361 RTPLGGCYTS VLVLLALGLL APYFQYIPKA ALSAVIISAV IFMIEFEVIK PLWRCSRREL 420
  421 LPGAITFVMS LAVGVEIGLL LGVSTDVAFL VYRAARPVLS VSKLQTTNGI NYILIRPKHS 480
  481 SLYFPAVEWV RSGISKALTI HGTAPVVLDC AHVHEFDFTA ARGMGSLQKE LAKANAPLFL 540
  541 MSADKTIGVI LKESTNIDFP TIDCPDDLEF LLEQTADYVL HLQISAPLVE SRLVHGDSGE 600
  601 PTELSKLNGK SS