YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Vha16-2-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTAALNEEP SYAFFLGCTG AAVAIIFTTL GASYGTAVSG VGIAKMAVNR PDMIMKAIIP  60
   61 VVMAGIIAIY GLVVSVLIAG SIGDDYTMED SYVHLGAGLS VGLPGLTAGV AIGIAGDAGV 120
  121 RGTAEQPRLF VGMVLILIFA EVLALYGLIV AIYLYTKL

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.85
Transmembrane Helix	13	38	0.83
Cytoplasmic	39	56	0.71
Transmembrane Helix	57	80	0.90
Non-Cytoplasmic	81	94	0.76
Transmembrane Helix	95	116	0.90
Cytoplasmic	117	128	0.74
Transmembrane Helix	129	154	0.88
Non-Cytoplasmic	155	158	0.78