YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Vha16-3-PA, Vha1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATDAADKDK PAYSFFFGSM GAASAIIFSA LGAAYGTAKS GTGIAAMAVM RPELIMKSII  60
   61 PVVMAGIIAI YGLVVSVLIA GSLSDSYTIR KGYIHLAAGL SVGFAGLAAG FAIGIVGDAG 120
  121 VRGTAQQPRL FVGMILILIF AEVLGLYGLI VAIYLYTK

Type	Start	End	Confidence
Cytoplasmic	1	12	0.69
Transmembrane Helix	13	37	0.86
Non-Cytoplasmic	38	58	0.65
Transmembrane Helix	59	81	0.92
Cytoplasmic	82	92	0.61
Transmembrane Helix	93	116	0.90
Non-Cytoplasmic	117	130	0.65
Transmembrane Helix	131	156	0.87
Cytoplasmic	157	158	0.62