YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Alg10-PA
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.79
Transmembrane Helix	7	26	0.72
Non-Cytoplasmic	27	61	0.83
Transmembrane Helix	62	95	0.71
Cytoplasmic	96	110	0.78
Transmembrane Helix	111	134	0.63
Non-Cytoplasmic	135	152	0.65
Transmembrane Helix	153	172	0.57
Cytoplasmic	173	230	0.79
Transmembrane Helix	231	252	0.79
Non-Cytoplasmic	253	265	0.82
Transmembrane Helix	266	284	0.92
Cytoplasmic	285	298	0.82
Transmembrane Helix	299	316	0.93
Non-Cytoplasmic	317	341	0.87
Transmembrane Helix	342	363	0.93
Cytoplasmic	364	371	0.83
Transmembrane Helix	372	390	0.84
Non-Cytoplasmic	391	416	0.76
Transmembrane Helix	417	433	0.84
Cytoplasmic	434	449	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGSWKLILP VGFVLYSLPL FLRVNGTSDY VIDEEFHIPQ GLAFCRKEFD VWDPKITTFP  60
   61 GLYLIALLLN PLSLCTVTGL RMLSLAGAGI NILLLYKIRR RILAGSGGNS YAAHEAITMS 120
  121 VLPPLYFFSH LYYTDTLSLT MVLLFYNYWQ QEAHLPAAVF GAASVLMRQT NIVWVCMATG 180
  181 MTVLDTLVNQ CARTGRVPKE NVRLMGKELW LQLVSSPQLL CNCILSILAK CCFYASIILP 240
  241 FVGFLFINGS IVVGDKSAHE ASLHVPQLFY FAIFAAGFGI SNTIRQFRPA AELIRRNRVL 300
  301 SLLALLLILV VVHLNTEVHP YLLADNRHYT FYIWSRLYGR FWWFRYAMAP AYLLSICVLF 360
  361 CGLRHMPESF KLMFPLSLFL VLCFQRLLEL RYFLVPYILF RLNTRHTRKG YAEWLELGAH 420
  421 LLLNVATFYV YFTKEFYWKN YRTPQRIIW