YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Fad2-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRNTKDTTG VLYESDVETV DGGLSTELSN RKTTDGSKLE LVWVNIVLFV ILHISSLYGV  60
   61 WLLFTSATWT TVVLFWPTVV VTILGVSGGA HRLWAHRTFK ANTPLKLIFL FLNTLAFQDA 120
  121 VYYWARDHRV HHKYTETDAD PYNSQRGWFF AHIGWLCCRK HPEVVEKGKQ IDLSDLEADP 180
  181 LIMFQKKYYL LLMPIICFVL PTVLPMYLWG ESLNVSWHVM ALLRWCLSLN LIWTVNSSAH 240
  241 MHGMRPYDKN ICPVDQGFLI FFRVGEGYHN YHHVFPWDYK SAELGKYSQD VTTKFIEFMA 300
  301 YLGWAYDLKS VSLDLVKQRV QRSGDGSHPV WGWGDKDQLK EDVGVTTITH QRNEK

Type	Start	End	Confidence
Cytoplasmic	1	40	0.98
Transmembrane Helix	41	62	0.94
Non-Cytoplasmic	63	71	0.73
Transmembrane Helix	72	94	0.89
Cytoplasmic	95	187	0.95
Transmembrane Helix	188	209	0.93
Non-Cytoplasmic	210	216	0.79
Transmembrane Helix	217	235	0.91
Cytoplasmic	236	355	0.94