YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NijA-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLEHITLE MDKVPLGDNK TLENISKHSY GGAIDGRTRN TLRVPRAVPE TDDDDNDDRP  60
   61 FVKDGNDNPG VDDGLFSTVG GNGGNGGNVN VNVPNGGRRP SFSFPGYNGP GFVTINGVET 120
  121 PIPDVNAYQH KKTLAQGMMD LALLSANANQ LRYVLETSSQ HPYFYPSLLF ISLSIIFQIA 180
  181 VGVGLILNGQ YNIKNGHDIC RANRINNYTV SGIFIVTVVN VLISAFTVDR DTVPALPANT 240
  241 T

Type	Start	End	Confidence
Non-Cytoplasmic	1	166	0.82
Transmembrane Helix	167	187	0.94
Cytoplasmic	188	206	0.80
Transmembrane Helix	207	228	0.89
Non-Cytoplasmic	229	241	0.88