YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	vsg-PC, vsg-PD
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRQAKFLIL CLFVGLFSAN LCEEAVTTPA PADTTTQESK NTTTPPDTTT TVTPPSTSTT  60
   61 STTTEKTTTT PPITTSTEKT TTSTTPASTT SSTTPASTTS STTPATTTTT PGTTSTTTPS 120
  121 PNSTTTTPPP HTSTTPAPKP VPCGHFDGSS FIGGIVLTLG LLAIGLVAYK FYKARNERNY 180
  181 HTL

Type	Start	End	Confidence
Signal Peptide	1	22	0.97
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	150	0.98
Transmembrane Helix	151	172	0.84
Cytoplasmic	173	183	0.91