YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	vsg-PA, vsg-PB
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRQAKFLIL CLFVGLFSAN LCEEVTTPAP ADTTTQESKN TTTPPDTTTT VTPPSTSTTS  60
   61 TTTEKTTTTP PITTSTEKTT TSTTPASTTS STTPASTTSS TTPATTTTTP GTTSTTTPSP 120
  121 NSTTTTPPPH TSTTPAPKPV PCGHFDGSSF IGGIVLTLGL LAIGLVAYKF YKARNERNYH 180
  181 TL

Type	Start	End	Confidence
Signal Peptide	1	22	0.96
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	149	0.99
Transmembrane Helix	150	171	0.84
Cytoplasmic	172	182	0.91