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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: fry-PB
Protein type: Transmembrane
Type Confidence: 0.60
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQLELQDDL FGLEAGVAGT NQNPNEQHLS DPAASPSTSS PANNNATAGA ATTSTATVIT  60
   61 AVGGAGGGVA AAGVGVVTPT KSPQRNAFQE DAYQANLAGG DSVDNIESAQ LDGGNPSGGS 120
  121 PGQRHSINSA EYTSTPKTTR SGPNGSTTAS GTTSPINYQL PGDDYPYGIE YESQQLLYQQ 180
  181 QQQQQQQQSQ QQQQQQQQQQ QQLPVGDVEQ SSAVTYQSLP VSRQSYASPP ALIIPQRQSL 240
  241 LPWGAHSRSS IINVLPSYTQ AEMHALAARV ASVETSAPRP GEIVMRNLFS DFTAQAEKKI 300
  301 ELVMLESADK NLSKLLQRGE DQQFDQLLSA LGSVAEHCLP SLLHTLLAWH RRQLSDMEIK 360
  361 NDLKKPAPSG SSSQAATNKP TVDLDFQLQR REAAVEFIFC LALIEILKQL PYHPGHEDLV 420
  421 RSIENLAFKH FKYKDGLQNN PNALNIHMIA DLYAEVIGVL AQSRFASVRK RFMSELKELR 480
  481 GKEVSPTTTQ SIISLLMGMK FFRVKMVPIE EFEASFQFMH ECGQYFLEVK DKDIKHALAG 540
  541 LFVEILVPVA AAVKNEVNVP CVKNFVELLY VQTLDASTKS KHRLALFPLV TCLLCVSQKT 600
  601 FFLTNWHYFL AMCLSNLKNR DAKMSRVALE SLFRLLWVYM IRIKCESNSA THSRLQSIVN 660
  661 SLFPKGSKGV VPRDTPLNIF VKIIQFIAQE RLDFAMREIV YDLLCVGRSI KLILNPERMS 720
  721 IGLRAFLVVA DSLQQKAGEP PMPRTVPVLP SGNTLRVKKT FNKMYVLLTD DTARSIGMST 780
  781 YFPHVRRVFV DILRALDVHY GRPLMMTNTQ NQNKEPDEML SGERKPRIDL FRTCVAAVPR 840
  841 LIPDTMTPHE LVDMLSRLSV HMDEELRILT HQSLTTLVID FPDWRQDVVH GYTQFLVRDV 900
  901 TDTYPQLLEN CTRILFTFLN IWRCATNVNG NNTTSAPSGA TNVVNTSQAK MTTATTTTTV 960
  961 VQATVVQVTS APAKDTASSQ LSKQQHLNTA SSAASSITTS SGMSSITQHT VLNMASDVGK1020
 1021 KNEIPLATTL HFVEGFALVL LCNYRTYLRK LAALILKEVK NLMRALGIPE TEPPLIDVMD1080
 1081 RCVPGIIEKC LPQLPQTEKT AILNANCIDL QWIAERSSGV WLAGLTDDNS KSSTSTLNLS1140
 1141 QSSSTPNASA TAASSPQLPF DPWATCLFGL LERQNVLQQC PSAVAQAWPI CFTRLNALYS1200
 1201 VIDPTPVSDN RASLLRSSAP TKKVPTESQK DSYLRLWRNQ VACAMRLVPQ IPSVAVRCAS1260
 1261 PDLSLSSSPD SLNADRSDKS AMGSASPQAL YKLVVPLLRC EVVDVRDAAV NALGLINHDA1320
 1321 LKDLMEELVV YIREAVDCKQ ENMRRRRRRD ALRLQVVRVL EKIAENGTFG VSTCVLERDT1380
 1381 MSLHPTFVLY ISGAMGYLTS ETDKDNLSIR EVKAHFCNFI RKMIKNFPLE ACATLLSRVL1440
 1441 KRNLFNLFAA WCGSFSKPLG YTMQSDHTLE EEKLQFSALQ AMSALLCCGQ IFNPSYLQDD1500
 1501 SIIYKWLDML LTSKNEKIYQ LARDTVVLLL ESNPDIGQLL EWVIDRCYTS TPREADACFL1560
 1561 ALASIFSAKE YPCDHYTSVI TVTLLMTGCP RVEVHATALQ LLQILDKRFF GSVVGTLHSD1620
 1621 SDKEDDKVGT LDVLLSSAYC RSQRFLSKQL AQLRPELTMS IFSEITHRFQ SAREDVRALL1680
 1681 LQCLLPWLQN MELVATSVPP ATPLSYIMYF PDSGTRGRRE GTGSTEATEM ILNNLFYITA1740
 1741 KFSDAHPRDI EELWGTLCQF WPNNLKVILR YLVIMSGMAP TELLPYAKRV ALYLVRSCPD1800
 1801 RLLDELMAEL QTVETLNCLI ERTETPPFYR LTSMRKASSH SADGQAAGGI NDSRIQDLAV1860
 1861 EKGTIHTKRH SGEDPMKIGT CKSDSGIRAY TQAAAAAAAA AVTPGSSGNR PPRGADKIRA1920
 1921 ASGPSILPRP EDILINDPEL RQEENVELRG TSDAAPNGHP HPLPMPEYGG YFAPLTEFLP1980
 1981 DVSLPISGFH RCNVAVMLLT DIVVDGIPGI DWTLHLPLML HILFLGLDHT RIIVREHCKQ2040
 2041 LCVNLLIVLA EHNDHLTVAR ILLNSETSKL DLGLTVPALP VIDNNFTELH QQFDSYLLHV2100
 2101 SPQAAAYALQ HNLSSSTIIA AHHQNLSQTP QSQQQTGSQN GQTTTPPGLT ATPAALQINP2160
 2161 NNSENSEVPL IHPDEHAPPQ PGPSMPIAHV IKSLLKFLAQ DTCQPLWNYE DITAKVWAVK2220
 2221 SAEQLSCFLK HMVKVFADSY PQARIAERWA QTALQLGLSC SSRHYAGRCL QIFRALNVPI2280
 2281 NSRMLSDILS RLVETVAEQG EDMQGYVTEL LLTLEAAVDS LDSDFRPLDV MKDIFKSTPN2340
 2341 LNNKDGGPNS ILPGKKSPSG MTPQSSNYSI PSHGRSTSYS VSYCGRKANN SPCDKQVELR2400
 2401 NRSSGIDLER SVVCKFGVGG GGAGSALSRS RSAQSLKMLG DTATQDDKMT ILAQLFWLSV2460
 2461 SLLESDYEHE FMLALRLLTR VLHRLPLDRP DARDKVEKLQ QQLKWTAYPG VHALLLKGCT2520
 2521 HSATYEPTIT LLSQFAPLLT LPVCDPTQSC AFPMNVIALL PYMLLHYEDA NEICIRSAEN2580
 2581 IAQVSTELGA KLENLGTVMT LYSRKTFCKE SFQWTKCVVK YLHDTYAHMG LHMVAFLIEV2640
 2641 LEKGPQQVQV PVLNVIHCML HYVDLSAPQA QSINADLLRA IGKYLDTAYW KDSLKILKLI2700
 2701 VTRSSSLQVV PPSDGSSAGL SFSFYGAYPD SDMFCKKELA GRTMEFTFDV SQTPLIGRRI2760
 2761 LLKTEEPVAG GAVSTTGSSS LNSTLTNATT VTVAPSAAQQ QTNVQMQQQR ANTNVAALAA2820
 2821 AAAAQHQQQQ HAIGAGSSVV GTPNSPRRSA SLSPADTVPL SGWKRPWMSQ CRVRECLVNL2880
 2881 LTTCGQRVGL PKSPSVIFSQ SSDLMERQSS AASSTEETSG PQGDLSSGSR RDDGQPDFTV2940
 2941 FKDFDFLEYE DSIAGESTDN FNWGVRRHQL FEGDEDRLNC GSGIGGSIKG GHSSAFEDSF3000
 3001 SDKTPILSKR KRQIADDSSD EEAESESPLD EDHRQSFLKS GYSAVPPTSL SLRERRRRNS3060
 3061 VSRSDTSGSS AGDLGDLTPC NASPHLPGII RFSAAIHDEA EENWRRQVQA LLVNQPSAHT3120
 3121 SELLQQLYRL IKELTFKTVN ISKEAKKFFT GIGSQLGNRI SLFTDLLSSR ADPPQVWCSE3180
 3181 LQATSPKLFE TLRFNVLEVQ EHLETFFDRK DQVLECLDAV KTSCKLSLFN EADVAASGLE3240
 3241 LPSTSSIVYM PFDPASTEVV LDLGRSLYKL MFQLLLLIES NHKISSNVVN HFRMNEDMHD3300
 3301 ISDLYALVRD ALVRYISEAE LDCLESSTST EGEHTPTPSP GLPMTPEEFE AVLTEHIDLQ3360
 3361 RWPSAIAHVR QYRRISTLNA SGYQNVTIFS YNSADNRQKW DEISVILNAY AHGIMKDRTE3420
 3421 AFIVSKSDSE VFEIYAILSE NLYQVSSALT NMEISMKSYS AGSASGNSHR SEQDIVTNL

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