YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG3408-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKPGDKAKV KVNVKERVVD ETCDLSLSEL SEIPVREIAS FKRVTVLDLS SNRLVNLGKN  60
   61 FSILTRLVRL DLSKNQIKFL PEDFGQLEQL RHLDLYNNCL EHLPISFGQL RRLRYLDLKG 120
  121 NPLTPAWEKI VGCCSTQKDC QQAAKNTVSI CANYKPEFIE RERLAAQESQ KMAGAGDSSA 180
  181 NAVQTNGGAA GGKKSTKPNN KKAKAKKLAG GGDNELTIKP VNAVGSGGSG AIALGSKSTQ 240
  241 KNNQKKKNSK GDSWLNLLSR AALSSLVSFL VLFIINLLII YMIMFKNPDI ADKLVEYIPH 300
  301 QYRDWILTKT EIFRLRVTDW ISEFRTPPEE H

Type	Start	End	Confidence
Non-Cytoplasmic	1	260	0.67
Transmembrane Helix	261	285	0.85
Cytoplasmic	286	331	0.67