YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	path-PC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	98	0.77
Transmembrane Helix	99	119	0.77
Non-Cytoplasmic	120	120	0.34
Transmembrane Helix	121	143	0.77
Cytoplasmic	144	179	0.91
Transmembrane Helix	180	201	0.92
Non-Cytoplasmic	202	215	0.74
Transmembrane Helix	216	236	0.91
Cytoplasmic	237	242	0.80
Transmembrane Helix	243	265	0.89
Non-Cytoplasmic	266	281	0.89
Transmembrane Helix	282	302	0.91
Cytoplasmic	303	311	0.88
Transmembrane Helix	312	334	0.91
Non-Cytoplasmic	335	364	0.88
Transmembrane Helix	365	387	0.87
Cytoplasmic	388	402	0.88
Transmembrane Helix	403	423	0.92
Non-Cytoplasmic	424	428	0.76
Transmembrane Helix	429	450	0.94
Cytoplasmic	451	461	0.86
Transmembrane Helix	462	485	0.88
Non-Cytoplasmic	486	500	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLDWQSECS NSVAREFHCQ HIRNRFDSVA SFSCVQTIAT ISMKMSDLEP TNVELRYKIQ  60
   61 PRKSDTEQAL AGNDFDPFAL RDNPHPTTDN ETLTHLLKAS LGTGILGMPF AFMCSGLIMG 120
  121 IFSTIFTAFI CTHCSYVLVK CGHKLYYRTR RTKMTFAEIA EAAFQKGPKW CRGFAPVAKF 180
  181 SILFGLFLTY FGTCSVYTVI VASNFEQLIS YWTGTAVSLR MLICIMLVPL ILIAWVPNLK 240
  241 YLAPVSMVAN VFMGLGLGIT FYYLVQDLPP VEERESVVWS TLPQFFSITI FAMEAIGVVM 300
  301 PLENNMKTPQ SFLGICGVLS QGMSGVTLIY MLLGFLGYLR YGSATGESIT LNLPIEEWPA 360
  361 QTVKVLISLA VYCTFGLQFF VCLEIIWDGI KEKCKKRPTL VNYVLRTVLV TAAVVLAVAV 420
  421 PTIGPFMGLI GAFCFSILGL IFPVVIELIV HWESGFGKYN WILWKNAIIT LCGIGALVFG 480
  481 TQAAIKDIVK AYSNNENVGE