YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PGRP-LF-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKTVVVTHP GKPINNEKRF RFELLYFCVI LLMVVGLAAG YFMWMMSFST HSPNKGLHIL  60
   61 DRSEWLGEPP SGKYPHLKLP VSNIIIHHTA TEGCEQEDVC IYRMKTIQAF HMKSFGWVDI 120
  121 GYNFLVGGDG QIYVGRGWHI QGQHVNGYGA ISVSIAFIGT FVNMEPPARQ IEAAKRLMDE 180
  181 GVRLHRLQPD YHIYAHRQLS PTESPGQKLF ELMQNWPRFT QDPTSLRLLS NETVKIVTRP 240
  241 YWLAQPPIVP LTPLKLPIES VRFVATNTPS CFTQAECTFR VRLLQNWHIE SNGYKDINYN 300
  301 FVAAGDENIY EARGWDHSCE PPKDADELVV AFIGPSSSNK KIALELIKQG IKLGHISKNY 360
  361 SLIDDLEKS

Type	Start	End	Confidence
Cytoplasmic	1	23	0.93
Transmembrane Helix	24	45	0.94
Non-Cytoplasmic	46	369	0.69