YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4484-PA, FBpp0...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	51	0.99
Transmembrane Helix	52	73	0.85
Non-Cytoplasmic	74	87	0.79
Transmembrane Helix	88	108	0.91
Cytoplasmic	109	120	0.86
Transmembrane Helix	121	140	0.92
Non-Cytoplasmic	141	187	0.73
Transmembrane Helix	188	204	0.65
Cytoplasmic	205	226	0.91
Transmembrane Helix	227	247	0.92
Non-Cytoplasmic	248	262	0.82
Transmembrane Helix	263	282	0.93
Cytoplasmic	283	391	0.96
Transmembrane Helix	392	410	0.89
Non-Cytoplasmic	411	440	0.87
Transmembrane Helix	441	460	0.91
Cytoplasmic	461	470	0.78
Transmembrane Helix	471	490	0.93
Non-Cytoplasmic	491	498	0.72
Transmembrane Helix	499	521	0.88
Cytoplasmic	522	541	0.94
Transmembrane Helix	542	565	0.84
Non-Cytoplasmic	566	576	0.76
Transmembrane Helix	577	598	0.95
Cytoplasmic	599	599	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGVTADASQ ANQLSSVRNP MIKYMLKTRE NHAREQDRDY SHVFRRKTRF EMFRLSAIAM  60
   61 AIEFAYAAET SFVSPILLQI GVDHKHMSMT WGLSPLIGFF MSPLLGSISD RCKLRWGRRR 120
  121 PIISILSFGI MCGLILVPYG KDLGLLLGDA GYTYAESALN FTSSSGGSVA ALVSGEATTG 180
  181 PSASDYKFAV ILTILGMVLL DFDADTCQTP ARTYLLDMCV PEEQPKAMTM FALFAGFGGT 240
  241 IGYAIGGVDW ETTHIGSFMG GNIPTVFTLV TIIFAVCYLI TVTTFREIPL PLIEQDELLR 300
  301 PLSEQAIKKE LKKKNNTIYY IQETTQLELQ MASDDPKRLE ALQGSYQNGY SPAVEKQGKS 360
  361 QDLETQSDYD APVSLKAYLK SIFIMPYSMR MLALTNLFCW MGHVTYCLYF TDFVGEAVFH 420
  421 GDPTAAPNSE AALNYEAGVR FGCWGMAIYA FSCSIYSLSV TKLMKWFGTK AVYISGMIYY 480
  481 GIGMLVLGLW PTKWGVLVFS TSAGILYGTI FTVPFILVAR YHAKNCFSIK NGEIVPLKQA 540
  541 RGLGTDVAII SSMVFIAQLI VSLSVGPLVS WMDTTCAVLY ASTFLSFLAA IAAMFVLYV