YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4942-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALLLLRTC RSSSIAGIYK YTYQGTTIAN HTCNHRLSST EAAAASVQLA NAGGLVGYWQ  60
   61 TLSNSTPVAY MQDVLIKIHD YSGLPWWASI VLSTFLFRSV VTLPLTIYQH KITARIEKIA 120
  121 LEMPAIVEEL KKEAAMAKHK FKWSEKQTQI VYRRSIKKQW QNLIVRDNCH PMKTMIVLWG 180
  181 QIPLWIFQSV ALRNLVYMLP DPTSIQAQIV TTEMTIGGFG WIPNLTVVDN SYILPVALGL 240
  241 INLAIIEVQA MSRTRPSTRL QNIANNVFRG LSVVMVPVAC TVPSALCVYW VASSSFGLAQ 300
  301 NLLILSPEVR RSVGIPKTQT ELSEPYDLLW LKIQQRLRLA ERAPADKPAA K

Type	Start	End	Confidence
Cytoplasmic	1	43	0.82
Transmembrane Helix	44	62	0.68
Non-Cytoplasmic	63	83	0.82
Transmembrane Helix	84	108	0.75
Cytoplasmic	109	174	0.93
Transmembrane Helix	175	192	0.81
Non-Cytoplasmic	193	230	0.78
Transmembrane Helix	231	250	0.89
Cytoplasmic	251	269	0.86
Transmembrane Helix	270	292	0.91
Non-Cytoplasmic	293	351	0.91