YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0312164, CdsA-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVRRRKGE DEPLEDTAIS GSDAANKRNS AADSSDHVDS EEEKIPEEKF VDELAKNLPQ  60
   61 GTDKTPEILD SALKDLPDRW KNWVIRGIFT WIMICGFALI IYGGPLALMI TTLLVQVKCF 120
  121 QEIISIGYQV YRIHGLPWFR SLSWYFLLTS NYFFYGENLV DYFGVVINRV EYLKFLVTYH 180
  181 RFLSFALYII GFVWFVLSLV KKYYIKQFSL FAWTHVSLLI VVTQSYLIIQ NIFEGLIWFI 240
  241 VPVSMIVCND VMAYVFGFFF GRTPLIKLSP KKTWEGFIGG GFATVLFGIL FSYVLCNYQY 300
  301 FICPIQYSEE QGRMTMSCVP SYLFTPQEYS LKLFGIGKTL NLYPFIWHSI SLSLFSSIIG 360
  361 PFGGFFASGF KRAFKIKDFG DMIPGHGGIM DRFDCQFLMA TFVNVYISSF IRTPSPAKLL 420
  421 TQIYNLKPDQ QYQIYQSLKD NLGDMLT

Type	Start	End	Confidence
Cytoplasmic	1	82	0.87
Transmembrane Helix	83	106	0.82
Non-Cytoplasmic	107	178	0.61
Transmembrane Helix	179	200	0.88
Cytoplasmic	201	209	0.80
Transmembrane Helix	210	229	0.94
Non-Cytoplasmic	230	235	0.86
Transmembrane Helix	236	260	0.90
Cytoplasmic	261	275	0.86
Transmembrane Helix	276	295	0.94
Non-Cytoplasmic	296	344	0.95
Transmembrane Helix	345	367	0.91
Cytoplasmic	368	447	0.85