YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24660463, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPQSNAAAA AAAAAASCNA AAVAAAAAVA SGNQGSNGNA SGNGNAVVAA TGNGNGGNPG  60
   61 QNNNNNNGNN SGNSNNNSNN NVSSVQHVAN AVAAAVIANE HHNHLNSLKA RFQPASSGKS 120
  121 TSNSKEIICP DDKYKEEGDI WNVEAQTAFL GPNLWDKTLP YDADLKVTQY ADLDEFLSEN 180
  181 NIPDGLPGTH LGHSSGLGHR SDSLGHAAGL SLGLGHITTK RERSPSPSDC ISPDTLNPPS 240
  241 PAESTFSFAS SGRDFDPRTR AFSDEELKPQ PMIKKSRKQF VPDELKDDKY WARRRKNNIA 300
  301 AKRSRDARRQ KENQIAMRAR YLEKENATLH QEVEQLKQEN MDLRARLSKF QDV

Type	Start	End	Confidence
Signal Peptide	1	26	0.95
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	353	0.99