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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SMSr-PA
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDGEIGDPV TQPRSEGGGL VTMDQETRTH YLDAATDKHL TNGSPDPEPV DPLLVAQWSI  60
   61 ENVTSWATCM EHFSRTLLDC LRQEAIDGEV LLSLTEEDVR DMRYKLGYKL TFGELKKFWI 120
  121 AVLKLQLLVK NSSAESVILG IECHGNGNSV YMPLASTGCG PPSSSTCPCP QAECPSYVSD 180
  181 CDTYLRMGGR YVPPEYFKTA MSLGYSFVVT WITSLTMVIV HERVPDMKRY PPLPDIFLDN 240
  241 VPHIPWAFNM CEITGSLLFT IWVVVLTFHK YRLVLLRRFF ALAGTVFLLR CVTMLITSLS 300
  301 VPGTHLQCSQ KDFAIDDPNV DMVGALIIRM SRAYRIWSGL GMSIQGVRTC GDYMFSGHTV 360
  361 ALTLLNFFIT EYTPRNLYFL HTLTWLLNMF GIFFILAAHE HYSIDVFVAF YITSRLFLYY 420
  421 HTLANNRALM QSDSKRTRVW FPMFSYFESS VDGMVPNEYD TLGSLIDGII EQIFKAKDQL 480
  481 AISVKRCWLD APLSGNSSAH MFGGESEQCL RNGTASAAFF SPHQSLIGGL GGQRSQTHLN 540
  541 SAQSGSSTPT PATSAPTKSL PTQKKTFRDA SVDPFSRTTF AAVQQAENVK DSPMKEKKHL 600
  601 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle